Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq61 147 3e-30 seq5 147 3e-30 seq65 86.0 8e-12 seq39 86.0 8e-12 >seq61 Length=186913 Score = 147 bits (162), Expect = 3e-30 Identities = 866/1369 (63%), Gaps = 30/1369 (2%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| || || ||||| ||||| || | ||||| | |||||||| || ||||| Sbjct 183698 GTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCATG 183757 Query 110780 GGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACAT 110837 || || | | || || ||| || | ||| | || || ||| ||||||| Sbjct 183758 GGGGCGACAAGCAATGA--GTTGCGGACACCGTGCTGGGCGACCTGTTGCTTGAGAGTGG 183815 Query 110838 CCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTT 110894 |||| || | | | || | || |||| |||| |||| || |||| ||| ||||| Sbjct 183816 CCCAATCCCAAAGATCAG-TGGGGGTCACGTTCC-ACATATCGTACTGGAAGATGCCCTT 183873 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 || || |||| || ||| |||| || |||| |||||| | |||||||| | Sbjct 183874 GG-ACACGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTCCATGG 183932 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 | ||||| || ||||| || |||||||||||||| || || | | |||||||| Sbjct 183933 ATGTCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCTT 183992 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074 | || || || |||| ||||| | || || || || || || || | |||| Sbjct 183993 CCTCCGAGTCGAATGGATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCCCA 184052 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA---CGGGATAAAAAT 111131 | ||||| || | ||| || | || || |||| | | ||||| |||| ||| ||| Sbjct 184053 AGCCAATGGGGCGGTGGCGAAGGTTGGA---TCGCTCGGCCTCAATGACGGGGTAATAAT 184109 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | || |||| ||| | ||| || | | ||| | | || | ||| | Sbjct 184110 TGACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAATTTCT 184169 Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 ||||||| || | | | || | ||| || ||| | || || ||||| | Sbjct 184170 TGAAATCAAACGT-CTTG-CGGTTGAC-GACGTATGATGGCAACGCAATGCTGGCCAAGT 184226 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 |||| || || ||||||| | ||| || | ||| || || || || ||| | Sbjct 184227 TGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATTGCTGC 184286 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 || || || || | |||| ||||| || ||||||||| |||||||| | | Sbjct 184287 ATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAAGA 184346 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCT 111430 || | || | |||||||| ||||| | | |||||| || | ||| ||| | ||| || Sbjct 184347 TGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTTTGCGCCT 184406 Query 111431 GGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 | | ||||| || || |||||| ||||||||| | | ||| || || || Sbjct 184407 TGATCGTCTGGCGC--GCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAATTC 184464 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACC 111549 || ||| | | ||| | | || |||| || || || || || ||||| | || Sbjct 184465 ATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCC 184524 Query 111550 ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 | |||| || ||||||||||| | || || | ||| || | |||| | ||| | Sbjct 184525 ATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCGCG 184584 Query 111610 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 111669 || ||| || | || ||| || || || | || | || || || Sbjct 184585 CGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCGGC 184644 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG---CCCAGCTTGATTTAC 111726 |||||| ||||| || || | || | | ||| || ||| |||| | || Sbjct 184645 GTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCAAC 184704 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 |||||||| ||| ||| || ||||| ||||| || | | ||||| | ||||| Sbjct 184705 GTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCATT 184764 Query 111787 TGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || ||| ||||| |||| | | | ||||||| || ||||| || Sbjct 184765 GGTGCCGGCAATGTACGAGCCCG--TGGCGCGGATGTTGTGGATGTTCAAGCCAATGCCG 184822 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 || ||| ||| |||||||||||||| | | || || | ||||| || | || ||| Sbjct 184823 CCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATCGAG 184882 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 |||||||| | | | | |||||| ||||| ||||| | || || || |||||| Sbjct 184883 TCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCCGGCATTG 184942 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAG 112024 || | || || | ||||| |||| | | | ||||| | ||| |||||||| Sbjct 184943 AACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGTCTCCAAA 185002 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 | | |||||||||||| || ||||| || | || || ||||||| || Sbjct 185003 GCGGCATCAATGTCTTCGCCATGGATACCAACAGCCACACGCATGATCA 185051 >seq5 Length=887111 Score = 147 bits (162), Expect = 3e-30 Identities = 272/394 (69%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 9156 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 9215 ||| |||| |||||||| |||| ||| ||| ||| |||||| ||| | || ||||| Sbjct 16383 CGCTTCTACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAG 16442 Query 9216 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 9274 ||| || ||||||||||| |||||| ||| || || | ||| | | ||| | || Sbjct 16443 GAGACCACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGC-TACTG 16501 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||| || ||||||||||| ||| ||| |||||| || ||||| || || Sbjct 16502 GATCGTCGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAA 16561 Query 9335 CCATGAATCACCGAGACGAGG-TGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 9393 ||| || || || | || || ||| |||||| ||| ||||| | | | | || Sbjct 16562 CCACGAGTCTCCCCGCCGTGGCCGCA-CCTTTGTCACCCGCAAGATCAGCCGTGCTGTCG 16620 Query 9394 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 9453 | ||| |||| |||| | | | | ||||| ||||| |||| || | | Sbjct 16621 CCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCG 16680 Query 9454 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 9513 ||||||| ||||| |||||||| || || | |||||||||||||| || || || || Sbjct 16681 ATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGC 16740 Query 9514 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547 |||| || | ||| | || ||||| |||||||| Sbjct 16741 CCGAAGACTTTGTCCTTGCCACGGGCGAGACCCA 16774 >seq65 Length=159763 Score = 86.0 bits (94), Expect = 8e-12 Identities = 130/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 ||| ||||| || || ||| |||||||||||| || || | || || || ||||| Sbjct 96479 GTCATCCTTCATGTTGACCAGGTAGCAACTGGACAATTGAGGGCGCGGGGTGCCTGCATT 96538 Query 111964 GAAGAGGGTTGGTGTTGCGTG---AATGAACATACCTTGGGACATCTTGTCGTATGTCTC 112020 |||||||||||| || || || || |||| | | | ||||| ||| || |||| Sbjct 96539 GAAGAGGGTTGGGGTGGCATGGGTAAAGAACTTGC---GAGACATGAGGTCATAGGTCTG 96595 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTG 112080 ||| | | || | ||||| ||||||||||| | || || ||||||| ||| | ||| Sbjct 96596 GAAGGCGGCGTCCAGGTCTTTGCCGTGGATGCCAAGGGCAACACGCATGACCATATGCTG 96655 Query 112081 TGGG 112084 ||| Sbjct 96656 CGGG 96659 >seq39 Length=374988 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 170019 CCGAAATCGCAAAGCATAACAGCGAACAAGATTGTTGGGTCATAATCAA-GGACAT-TGT 170076 |||| | || ||||| |||| ||| | || || |||||| | |||| || || ||| Sbjct 328792 CCGACGTTGCCAAGCACAACACGGAAAAGGACTGCTGGGTCGTCGTCAATGGCCAGGTGT 328851 Query 170077 TTATGACCTCACAAAATTCCTTCCAGATCACCCCGGTGGTAAGAAGGCGATCATGCTCTT 170136 | | || |||| | || | |||| |||||||||||||| |||||| | |||||||| Sbjct 328852 TGA--ACGTCACCGACTTTTTGGCAGAGCACCCCGGTGGTAAAAAGGCGGTGATGCTCTT 328909 Query 170137 TGCTGGCAAAGATGCAACTGAAGAGTTTGATATGCTTCATCCCCCGAATGTTCTTAAAAA 170196 ||| || |||||||| |||| || || | ||||| || || |||| | ||||| Sbjct 328910 TGCCGGAAAAGATGCCTCTGAGGAATTCAACATGCTGCACAAGCCCGATGTCGTCAAAAA 328969 Query 170197 GTA 170199 ||| Sbjct 328970 GTA 328972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030830290400