Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq61 187 3e-42 seq5 116 5e-21 seq33 82.4 9e-11 >seq61 Length=186913 Score = 187 bits (206), Expect = 3e-42 Identities = 860/1351 (64%), Gaps = 34/1351 (3%) Strand=Plus/Plus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| ||||| |||||||||||| || | ||||| | |||||||| ||||||||| Sbjct 183698 GTGTAGGGCTCGAAGCACTCATTGAAGCCGAGCATTTGCGACGTGGAGGCGGTGGGCATG 183757 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | || | ||| |||| ||| | | | ||| |||||||| | || Sbjct 183758 GGGGCGACAAGCAATGAGTTGCGGACACCGTGCTGGGCGACCTGTTGCTTGAGAGTGGCC 183817 Query 118314 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 || || | | | || | | | | | ||||||||| |||||| ||| || | || Sbjct 183818 CAATCCCAAAGATCAG--TGGGGGTCACGTTCCACATATCGTACTGGAAGATGCCCTTGG 183875 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 118431 || | || || ||| | ||||| || ||||| | || ||||||||| | | Sbjct 183876 ACACGGGGCTGCCTTCATAGGTCTCGTAGGGGCCTTGGACGCGCGCCAATTCCATGGATG 183935 Query 118432 CCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 118491 ||| | ||| ||||| || || |||||||| || || || | |||||| || | Sbjct 183936 TCTCCATGGCGGCGTGGTAAATGGTTTCAAAGATTTGAATGTTGAGCATCTTGGCTTCCT 183995 Query 118492 CGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGG 118550 | || || || | || ||| | || || || || || || |||| || | | Sbjct 183996 CCGAGTCGAATG-GATAGCGCATGAGCATGAAGGTGTCAGCCAGGCCCTGGATGCCCAAG 184054 Query 118551 CCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA---CGGGATAAAAATTC 118607 ||||| ||||| || | | || || || ||| ||| | |||| ||| |||| Sbjct 184055 CCAATGGGGCGGTGGCGAAGGTTGGAT---CGCTCGGCCTCAATGACGGGGTAATAATTG 184111 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 |||||| | | | || | ||| |||| ||||| | | || | || | | Sbjct 184112 ACATCGATGATCTTGTTCAAATTGCGCGTGATCACCTTGACAACCTGGTGCAATTTCTTG 184171 Query 118668 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAG 118723 ||||||| |||| ||||| || || || || || || |||| Sbjct 184172 AAATCAAAC------GTCTTGCGGTTGACG-ACGTATGATGGCAACGCAATGCTGGCCAA 184224 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 || ||||| | ||||||| | ||| || | ||| ||||||||||| || Sbjct 184225 GTTGCACACGGCAATCTCATCGGGGCTCGAGTATTCGACAATCTCCGTGCACAAATTGCT 184284 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843 | || |||||||| | ||||| || || || || ||| ||||| |||||||| | Sbjct 184285 GCATTTGATGGTGCCGAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTCCTTGTACAA 184344 Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902 ||| | || | |||||||| || |||| || |||||| || | ||| | | | || Sbjct 184345 GATGAACGGATTGCCCGTCTCGGTCTGGGCCTCGAGAATCGCGTACCACAACTTTTGCGC 184404 Query 118903 CTGGCACAG-TGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 118961 || | | ||||| || || ||||| | ||||||||| | | ||| || || Sbjct 184405 CTTGATCGTCTGGCGC--GCACGGCCCTCCTTTTCGTACTTTTCAAACAAGGCCTCGAAT 184462 Query 118962 TCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 119021 || || ||| |||| | || |||| | ||||| ||||| ||||| | Sbjct 184463 TCATCGCCCCACACCTCGTGCAAATTGGGCGCCTCGTTGGGGCAAAAGAGCGACCAGTCG 184522 Query 119022 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 119081 ||| |||| || ||||||||||| | || || | ||||||||| | || | ||| Sbjct 184523 CCATTGGCCTCGACACGCTTCATGAACAAATCAGGCACCCAGAGCGCGTAAAACAAATCG 184582 Query 119082 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 || ||| || || | ||| || ||||| ||||||||| | || || Sbjct 184583 CGCGCGCGGATCTCGTCCTTGCCCACGTTCTTGCGCAATTCCAAAAAGGTGAAAATGTCG 184642 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTT 119198 |||||||| || || ||||||| || | | ||| || || | |||| Sbjct 184643 GCGTGCCAAGGCTCGAGGTACATGGCAAACGCACCCGGGCGCTTGTTCCCTCCTTGGTCA 184702 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 || || | ||| ||| ||| || || || ||||| || | | ||||| || |||| Sbjct 184703 ACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATAGGCAACAGACCATTGGCCGTGCCA 184762 Query 119259 TTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATAC 119316 || || || ||| ||||| | |||| | || | |||||||| || ||||| | Sbjct 184763 TTGGTGCCGGCAATGTACGAGCCCG--TGGCGCGGATGTTGTGGATGTTCAAGCCAATGC 184820 Query 119317 CCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 119376 | || ||| ||| ||||||||||| || | |||| | ||||||| || || |||| Sbjct 184821 CGCCGGCCGTCTTGGAGATTTGCGCACAGCACTTGAGCGTCTCGTAGATGCCCTCAATCG 184880 Query 119377 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGT 119436 |||| |||| | | | | |||||| ||||||||| || | || || || || | Sbjct 184881 AGTCCTCCTTCATAGTCAGCAAGAAGCACGACGACATTTGCGGGCGAGGCGTGCCGGCAT 184940 Query 119437 TGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCA 119496 |||| | || || ||||||| |||| | | | ||||| | ||| ||||||| Sbjct 184941 TGAACAACGTCGGGCTCGCGTGCGTGAAGAATCGCTCCGACATGAGCTGGTACGTCTCCA 185000 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACC 119527 | |||| ||||||||| || || ||||| Sbjct 185001 AAGCGGCATCAATGTCTTCGCCATGGATACC 185031 >seq5 Length=887111 Score = 116 bits (128), Expect = 5e-21 Identities = 260/388 (67%), Gaps = 2/388 (1%) Strand=Plus/Plus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 || ||||| || |||| ||| ||| ||| || ||| || | || ||||| ||| Sbjct 16389 TACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAGGAGACC 16448 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 11920 ||||||||||| || || || |||||| || | ||| | | ||| | ||| |||| Sbjct 16449 ACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGCT-ACTGGATCGT 16507 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 || ||||| || ||||| | | |||||| ||| || || || |||||||| Sbjct 16508 CGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAACCACGA 16567 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 12040 ||| ||||| ||||||| || || || ||||||| | || | || | || Sbjct 16568 GTCTCCCCGCCGTGGCCGCACCTTTGTCACCCGCAAGATCAGCCGTGCTGTCGCCGACAT 16627 Query 12041 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 12100 | |||| ||| | | | | ||||| ||| | ||||| || | || ||||| Sbjct 16628 CCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCGATTGGGG 16687 Query 12101 ACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGA 12160 || ||||||||||| || || | |||||||||| | || || || || ||| | || || Sbjct 16688 CCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGCCCGAAGA 16747 Query 12161 ATATGTCGTCGCGACGGGGGAGACACAC 12188 | |||| | || ||||| ||||| ||| Sbjct 16748 CTTTGTCCTTGCCACGGGCGAGACCCAC 16775 >seq33 Length=455653 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| ||| ||| | ||||||||||||| | || || || || ||||| || || Sbjct 391083 GCAAAGTCCGTGTGCAAACCCTCGTCACGGCAAATCAGCTCGTTGGAGAACGTCAAGCCA 391142 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || |||||||| | ||| || || | ||| | ||||||||||| || Sbjct 391143 GGCATCAAGCCGCGCTTCTTGAGCCAAAAGATGGACGCAAACGCACCAGAGAAGAAAATG 391202 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || ||| || |||| || ||||| ||||| Sbjct 391203 CCCTCAACCGCCGCAAAAGCAACAAGGCGCTCGGCAAA 391240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434048164440