Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq61 158 1e-33 seq5 141 1e-28 seq33 102 1e-16 >seq61 Length=186913 Score = 158 bits (174), Expect = 1e-33 Identities = 481/735 (65%), Gaps = 15/735 (2%) Strand=Plus/Minus Query 104232 TGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACAT 104291 || ||||||| ||||| | ||||| ||||| |||||||||||| | | |||||||| | Sbjct 185051 TGATCATGCGTGTGGCTGTTGGTATCCATGGCGAAGACATTGATGCCGCTTTGGAGACGT 184992 Query 104292 ACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTA 104351 || | ||||| | | | |||| ||||| | || || | |||||||| || | Sbjct 184991 ACCAGCTCATGTCGGAGCGATTCTTCACGCACGCGAGCCCGACGTTGTTCAATGCCGGCA 184932 Query 104352 CACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACG 104411 | || | || |||||||| |||||| | | | | ||||||||||| || | | Sbjct 184931 CGCCTCGCCCGCAAATGTCGTCGTGCTTCTTGCTGACTATGAAGGAGGACTCGATTGAGG 184872 Query 104412 GTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA 104471 | ||||| | || || | | |||||||||||||| ||| ||| || || ||||| Sbjct 184871 GCATCTACGAGACGCTCAAGTGCTGTGCGCAAATCTCCAAGACGGCCGGCGGCATTGGCT 184812 Query 104472 TGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAAATGGTCAATC 104529 || ||||||| | | | |||| ||||| ||| || || ||||| | Sbjct 184811 TGAACATCCACAACATCCGCGCCA--CGGGCTCGTACATTGCCGGCACCAATGGCACGGC 184754 Query 104530 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGC 104589 ||||| | | || ||||| ||||| || ||| ||| |||||||| || | |||| Sbjct 184753 CAATGGTCTGTTGCCTATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTTGACCAAGG 184694 Query 104590 TGGG---CGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCAT 104646 ||| || ||| | | || | || || ||||| |||||||| || || | Sbjct 184693 AGGGAACAAGCGCCCGGGTGCGTTTGCCATGTACCTCGAGCCTTGGCACGCCGACATTTT 184634 Query 104647 GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG--CGGTGC-CGCGATCT 104703 || | || ||||| ||| | | | | |||| | | | | || |||||| | Sbjct 184633 CACCTTTTTGGAATTGCG---CAAGAACGTGGGCAAGGACGAGATCCGCGCGCGCGATTT 184577 Query 104704 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 104763 || | ||| |||||| | || ||| | ||||||||| | || |||| | |||| | || Sbjct 184576 GTTTTACGCGCTCTGGGTGCCTGATTTGTTCATGAAGCGTGTCGAGGCCAATGGCGACTG 184517 Query 104764 GTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGA 104823 ||| |||||||| || || |||| || | | ||| | ||| || || || || Sbjct 184516 GTCGCTCTTTTGCCCCAACGAGGCGCCCAATTTGCACGAGGTGTGGGGCGATGAATTCGA 184457 Query 104824 AGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGA 104883 ||| | | ||||||||| | || || || ||| |||| | | || || | Sbjct 184456 GGCCTTGTTTGAAAAGTACGAAAAGGAGGGCCGTGCGCGCCAGACGAT-CAAGGCGCAAA 184398 Query 104884 TG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACA 104942 | ||||| | || |||||| || | || |||||||| || | || | ||| | |||| Sbjct 184397 AGTTGTGGTACGCGATTCTCGAGGCCCAGACCGAGACGGGCAATCCGTTCATCTTGTACA 184338 Query 104943 AAGACGCCTGTAACC 104957 | ||||| || |||| Sbjct 184337 AGGACGCGTGCAACC 184323 >seq5 Length=887111 Score = 141 bits (156), Expect = 1e-28 Identities = 275/401 (69%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || || ||| ||| ||| || || || ||||| ||||| Sbjct 16383 CGCTTCTACCAAGCCTCCACCTCTGAGCTGTATGGCAAGGTTGTCGAGACTCCCCAAAAG 16442 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 7350 ||| || ||||||||||| |||||| ||| || || | ||| | | ||| | || Sbjct 16443 GAGACCACGCCCTTCTACCCTCGCTCGCCCTATGGTGTTGCCAAGCTGTATGGC-TACTG 16501 Query 7351 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7410 | ||||| || ||||||||||| ||| ||| |||||| || ||||| || || Sbjct 16502 GATCGTCGTCAACTACCGCGAGTCCTACAACATGTACGCGTGCAATGGCATCCTGTTTAA 16561 Query 7411 CCATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCA 7469 ||| || || || | || || ||| ||||||||| ||||| | | | | || Sbjct 16562 CCACGAGTCTCCCCGCCGTGGCCGCA-CCTTTGTCACCCGCAAGATCAGCCGTGCTGTCG 16620 Query 7470 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAG 7529 | ||| |||| |||| | | | | ||||| ||||| |||| | | | Sbjct 16621 CCGACATCCACTTGGGTCGCCAGGAATGCTTGTATTTGGGCAACATTGACGCCAAGCGCG 16680 Query 7530 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 7589 ||||||| ||||| |||||||| || || | |||||||||||||| || || || || Sbjct 16681 ATTGGGGCCACGCCAAGGACTACGTCGAGGGCATGTGGCTCATGCTCCAGCAGGACGAGC 16740 Query 7590 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTG 7630 |||| || | ||| | || ||||| |||||||| || ||| Sbjct 16741 CCGAAGACTTTGTCCTTGCCACGGGCGAGACCCACACTGTG 16781 >seq33 Length=455653 Score = 102 bits (112), Expect = 1e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||| ||||| || | || |||||| |||||||| || |||||||||||| | || Sbjct 391240 TTTGCCGAGCGCCTTGTTGCTTTTGCGGCGGTTGAGGGCATTTTCTTCTCTGGTGCGTT- 391182 Query 94858 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | || | ||||||||||||||| || | ||||| || | ||||||||||| Sbjct 391181 TGCGTCCATCTTTTGGCTCAAGAAGCGCGGCTTGATGCCTGGCTTGACGTTCTCCAACGA 391122 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| || | ||||||||||| | ||| || |||||| Sbjct 391121 GCTGATTTGCCGTGACGAGGGTTTGCACACGGACTTTGCG 391082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259713676760