Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq61 223 4e-53 seq5 150 2e-31 seq15 131 2e-25 seq67 111 2e-19 seq65 100 3e-16 >seq61 Length=186913 Score = 223 bits (246), Expect = 4e-53 Identities = 469/697 (67%), Gaps = 2/697 (0%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| |||||||| | || || ||||||| || || ||| || ||| || |||||| Sbjct 184969 CTTCACGCACGCGAGCCCGACGTTGTTCAATGCCGGCACGCCTCGCCCGCAAATGTCGTC 184910 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 |||||| || || | |||||||| |||||||| || ||||||||||||||||||||| Sbjct 184909 GTGCTTCTTGCTGACTATGAAGGAGGACTCGATTGAGGGCATCTACGAGACGCTCAAGTG 184850 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGC 53451 ||||| || ||||||||| | | || || || || | || | ||| |||| || Sbjct 184849 CTGTGCGCAAATCTCCAAGACGGCCGGCGGCATTGGCTTGAACATCCACAACATCCGCGC 184790 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 | ||| | || || || || ||| ||| |||| | |||||||||| || Sbjct 184789 CACGGGCTCGTACATTGCCGGCACCAATGGCACGGCCAATGGTCTGTTGCCTATGCTGCG 184730 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTT 53571 ||| |||||||||||||| || ||||| |||| || || |||||| ||| |||| Sbjct 184729 CGTGTTCAACAACACGGCGCGCTACGTTGACCAAGGAGGGAACAAGCGCCCGGGTGCGTT 184670 Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAA 53631 ||||| ||||||||||| ||||||||||||||| | ||| | || |||| ||| Sbjct 184669 TGCCATGTACCTCGAGCCTTGGCACGCCGACATTTTCACCTTTTTGGAATTGCGCAAGAA 184610 Query 53632 TCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCT 53691 ||| | || ||||| ||| || || ||||| || || ||| | || || | Sbjct 184609 CGTGGGCAAGGACGAGATCCGCGCGCGCGATTTGTTTTACGCGCTCTGGGTGCCTGATTT 184550 Query 53692 CTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCC 53751 |||||| | || ||| | | || |||| || | ||||| |||||| || Sbjct 184549 GTTCATGAAGCGTGTCGAGGCCAATGGCGACTGGTCGCTCTTTTGCCCCAACGAGGCGCC 184490 Query 53752 CGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCA 53811 | | || | || | || || || || | | ||| | | ||||| | | Sbjct 184489 CAATTTGCACGAGGTGTGGGGCGATGAATTCGAGGCCTTGTTTGAAAAGTACGAAAAGGA 184430 Query 53812 GGGCCGCTACAAG-AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCC 53870 |||||| | | | ||| | ||||||||| || | ||| | || || ||| || || Sbjct 184429 GGGCCG-TGCGCGCCAGACGATCAAGGCGCAAAAGTTGTGGTACGCGATTCTCGAGGCCC 184371 Query 53871 AGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACC 53930 || |||||||| | |||| ||| | |||||||| || |||| || ||||| Sbjct 184370 AGACCGAGACGGGCAATCCGTTCATCTTGTACAAGGACGCGTGCAACCGCAAATCCAACC 184311 Query 53931 AGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 || ||||| ||||| |||||||| ||||| || || Sbjct 184310 AGCAGAACCTCGGCACCATCAAATGCAGCAATTTGTG 184274 >seq5 Length=887111 Score = 150 bits (166), Expect = 2e-31 Identities = 357/530 (67%), Gaps = 17/530 (3%) Strand=Plus/Minus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGAC-TGCTGCAACATAAGC 124565 |||| ||||| |||||| ||| || || |||||||| ||| | ||||| | ||| ||| Sbjct 16776 TGTGGGTCTCGCCCGTGGCAAGGACAAAGTCTTCGGGC-TCGTCCTGCTGGAGCATGAGC 16718 Query 124566 CACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG 124625 |||||| | | ||||||||||| ||||| ||||| ||||||||||| || | ||| || Sbjct 16717 CACATGCCCTCGACGTAGTCCTTGGCGTGGCCCCAATCGCGCTTGGCGTCAATGTTGCCC 16658 Query 124626 AGCTCGA----TTGGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGC 124680 | | | || | |||| | | | || || | | | | | ||||||| Sbjct 16657 AAATACAAGCATT--CCTGGCGACCCAAGTGGATGTCGGCGACAGCACGGCTGATCTTGC 16600 Query 124681 GCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACG 124740 | || ||||| | || || || |||||||||||| ||||| |||||| | |||| Sbjct 16599 GGGTGACAAAGGTGCGGCCACGGCGGGGAGACTCGTGGTTAAACAGGATGCCATTGCACG 16540 Query 124741 CAAACATCCCGTACGACTCGCGGTAGTTTTTCGTC-ATCCAATACCCAAAGAGCTTGGAC 124799 | |||| ||| |||||||||||| || || | ||||| || ||| | ||||||| Sbjct 16539 CGTACATGTTGTAGGACTCGCGGTAG-TTGACGACGATCCAGTAGCCATACAGCTTGGCA 16481 Query 124800 ACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATC 124859 || |||||||| || |||||||| || ||| | || ||||||| || | || | Sbjct 16480 ACACCATAGGGCGAGCGAGGGTAGAAGGGCGTGGTCTCCTTTTGGGGAGTCTCGACAACC 16421 Query 124860 TTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA---TTTGAATTTTGAAATAGAATTC 124916 || ||| ||| ||| || || || || ||||| | | |||| | | | Sbjct 16420 TTGCCATACAGCTCAGAGGTGGAGGCTTGGTAGAAGCGCACGCGATCAGAAAGACCACAC 16361 Query 124917 GTTTGACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATTGGCGGTATAC 124976 || || || || ||||| | || || || || | ||| || |||| | || ||| Sbjct 16360 GT---GCGGATGGCGTCCAACAGGCGCAGAGTGCCAAGGGCATCGACATCACCAGTGTAC 16304 Query 124977 TCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTTGTA 125026 |||| | |||||||||| || || || || || ||| | | |||||| Sbjct 16303 TCGGACATGTCAAAAGACACCTTGACGTGCGATTGAGCAGCCAAGTTGTA 16254 Score = 138 bits (152), Expect = 1e-27 Identities = 240/345 (70%), Gaps = 13/345 (4%) Strand=Plus/Minus Query 158957 TGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCC 159016 |||| ||||| || || |||| |||||||| || || || ||| ||||||||||||| Sbjct 16776 TGTGGGTCTCGCCCGTGGCAAGGACAAAGTCTTCGGGCTCGTCCTGCTGGAGCATGAGCC 16717 Query 159017 ACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGA 159076 ||||| |||||||||| |||| ||||| ||||| ||||||||||| || ||||| || | Sbjct 16716 ACATGCCCTCGACGTAGTCCTTGGCGTGGCCCCAATCGCGCTTGGCGTCAATGTTGCCCA 16657 Query 159077 GCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGCCAGACCGAGCGTGATCTTG 159129 | | | |||| | | ||| || || | | | | |||||||| Sbjct 16656 AAT--ACAAGCATTCCTGGC--GACCCAAGTGGATGTCGGCGACAGCACGGCTGATCTTG 16601 Query 159130 CGCGTCACAAACTCTGC-TCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACA 159188 || || ||||| ||| || || || ||||| ||||||||||| ||||| | || Sbjct 16600 CGGGTGACAAA-GGTGCGGCCACGGCGGGGAGACTCGTGGTTAAACAGGATGCCATTGCA 16542 Query 159189 AGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGA 159248 ||| ||| ||| |||||||||||||| || |||||||| ||| | ||||||| Sbjct 16541 CGCGTACATGTTGTAGGACTCGCGGTAGTTGACGACGATCCAGTAGCCATACAGCTTGGC 16482 Query 159249 GACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 || || || || ||||| || || || || ||| ||||| Sbjct 16481 AACACCATAGGGCGAGCGAGGGTAGAAGGGCGTGGTCTCCTTTTG 16437 >seq15 Length=628964 Score = 131 bits (144), Expect = 2e-25 Identities = 243/353 (69%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 158949 GCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAG 159008 ||||| |||| || || || || || | |||||||| || || || ||| ||||| Sbjct 137930 GCGGACAGTGTGTGTTTCGCCCGTGGCCAGAACAAAGTCTTCGGGCTCGTCCTGCTGGAG 137871 Query 159009 CATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCAT 159068 ||||||||||||| |||||||||| |||| ||||| ||||| ||||||||||| || || Sbjct 137870 CATGAGCCACATGCCCTCGACGTAGTCCTTGGCGTGGCCCCAATCGCGCTTGGCGTCAAT 137811 Query 159069 GTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGCCAGACCGAGCG 159121 ||| || | | | | |||| | | ||| || || | | | | Sbjct 137810 GTTGCCCAAAT--ACAAGCATTCCTGGC--GACCCAAGTGGATGTCGGCGACAGCACGGC 137755 Query 159122 TGATCTTGCGCGTCACAAACTCTGC-TCCGCGCCGTTCCGACTCATGGTTAAACAGAATG 159180 |||||||||| || ||||| ||| || || || ||||| ||||| ||||| ||| Sbjct 137754 TGATCTTGCGGGTGACAAA-GGTGCGGCCACGGCGGGGAGACTCGTGGTTGAACAGGATG 137696 Query 159181 CCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAG 159240 || | || ||| ||| ||| ||||| ||||||||||| |||||| | ||| | Sbjct 137695 CCATTGCACGCGTACATGTTGTAGGATTCGCGGTAATTGACGACGATCCAGAAGCCATAC 137636 Query 159241 AGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 ||||||| || || || || ||||||||||| || || ||| ||||| Sbjct 137635 AGCTTGGCAACACCATAGGGCGAGCGAGGATAAAAGGGCGTAGTCTCCTTTTG 137583 Score = 111 bits (122), Expect = 2e-19 Identities = 237/346 (68%), Gaps = 11/346 (3%) Strand=Plus/Minus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGAC-TGCTGCAACATAAGC 124565 |||| || || |||||| | | || || |||||||| ||| | ||||| | ||| ||| Sbjct 137922 TGTGTGTTTCGCCCGTGGCCAGAACAAAGTCTTCGGGC-TCGTCCTGCTGGAGCATGAGC 137864 Query 124566 CACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG 124625 |||||| | | ||||||||||| ||||| ||||| ||||||||||| || | ||| || Sbjct 137863 CACATGCCCTCGACGTAGTCCTTGGCGTGGCCCCAATCGCGCTTGGCGTCAATGTTGCCC 137804 Query 124626 AGCT----CGATTGGCTTGGC-CGTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGC 124680 | | ||| | |||| | || || || | | | | | ||||||| Sbjct 137803 AAATACAAGCATT--CCTGGCGACCCAAGTGGATGTCGGCGACAGCACGGCTGATCTTGC 137746 Query 124681 GCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACG 124740 | || ||||| | || || || |||||||||||||||||| |||||| | |||| Sbjct 137745 GGGTGACAAAGGTGCGGCCACGGCGGGGAGACTCGTGGTTGAACAGGATGCCATTGCACG 137686 Query 124741 CAAACATCCCGTACGACTCGCGGTAGTTTTTCGTC-ATCCAATACCCAAAGAGCTTGGAC 124799 | |||| ||| || |||||||| || || | ||||| | ||| | ||||||| Sbjct 137685 CGTACATGTTGTAGGATTCGCGGTA-ATTGACGACGATCCAGAAGCCATACAGCTTGGCA 137627 Query 124800 ACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGG 124845 || |||||||| || || || || || || | || ||||||| Sbjct 137626 ACACCATAGGGCGAGCGAGGATAAAAGGGCGTAGTCTCCTTTTGGG 137581 >seq67 Length=144240 Score = 111 bits (122), Expect = 2e-19 Identities = 235/346 (68%), Gaps = 15/346 (4%) Strand=Plus/Plus Query 118010 ACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCG 118069 ||||| |||||||| ||||| ||||| |||| ||||||||||||||| || |||| Sbjct 132684 ACGAGGCCCTTGATGTGGGAGCCGTCGTAATCCTGATCGGTCATGATCATGAGCTTGCCG 132743 Query 118070 TACCGTAAATCTCTCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTA 118129 || || || | | | | | || | | || || | ||| || ||||| | || Sbjct 132744 TAGCGCAATTGGTCGACGTTGGTGTAGGTCATGCCGTGCTTGAGGCCAAGGATTTGCTTG 132803 Query 118130 AGGTTGGAAAATTCCTCATTTTCCGTCA---CCTGTTTTATGGTGGCGTCCCGAACGTTG 118186 | | || | ||||| || | | | |||| || ||||||||| || |||||| Sbjct 132804 ACGAAGGTGATTTCCTTGTTGCTCATGATGGCCTGATT---GGTGGCGTCGCGCACGTTG 132860 Query 118187 CGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCG 118246 || |||| || |||| || ||||| ||| || |||||||||||| || || | Sbjct 132861 AGCAGCTTGCCGCGCAAGGGGAACACACCATACAGGTCACGGCCCACCACCGACAGAC-- 132918 Query 118247 GCAAT-AGCA--AGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTG 118303 || | |||| | | ||| || |||||||||||||| | ||| || ||||||| || Sbjct 132919 -CACTGAGCACCAATGTCTTGGCAGAGTCACCCTCGGTCAGAATCAGCGTGCACTTTTTG 132977 Query 118304 CTGCGATGAGT---ACCGGCCCAATTAGCATCATCCAGCTTCGGAA 118346 || | | | ||||||| |||| || || |||||||| |||| Sbjct 132978 TTGTGTGGCCTCACACCGGCCAAATTGGCGTCGTCCAGCTTGGGAA 133023 Score = 89.7 bits (98), Expect = 6e-13 Identities = 199/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| |||||||| | || || | |||||| || ||||||| ||| | | ||||| || Sbjct 131860 CAAGCGCGTGAAAAGATAACGCGGGCTGGCGGCTGCCTTGCCGCCTTCATGTCGCGTGCC 131919 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || || || ||||| |||| | || | |||||| ||| || || | || |||| Sbjct 131920 GAATTGACCCGAGGGAACGAGCAAATTCACATTGTTGCTGCCGACAAAGTCTTGGGCCAT 131979 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGT-CTGCTCCGCGA 152200 || | | |||| || | |||||| ||||||||||| ||| ||| | || | Sbjct 131980 GTTGATCACCGTGGATGCCACAGACGCTTCGCCGTGGTGATATTGCGTGATGC-CAGCCA 132038 Query 152201 TGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGT 152260 ||| || | |||||| ||||| || ||||| | || ||||| ||| || Sbjct 132039 CGTAATTGGCAAGCTGCGCAACCTTGATTTCCGTGTTGCGGCCACGCTTGATACAACCGA 132098 Query 152261 AAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 ||| |||||||| || || || ||||||||||| ||| ||||| || ||| Sbjct 132099 AAAAGACCTTGCGATGACTGGGCTTGAAACCGTCCACGACGGATGGAATGGAGCGC 132154 >seq65 Length=159763 Score = 100 bits (110), Expect = 3e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAG 55785 ||||||| | | ||| ||||||||||||||| | ||| | || | || |||||| Sbjct 94605 CTCAAGGCGCTGTACAAGACGGTGTGGGAGATCTCGCAGC-GCGTGATCATCGACATGGC 94547 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATC 55844 ||| || || || |||| ||| |||||| || || ||||| | |||| | || | Sbjct 94546 TGCGGACCGCGGCGCGTTCATTGACCAGAGTCAATCCATGAACCTGTTCAGCAGCGACCC 94487 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | |||| ||| | | || ||||||||||| | ||||| ||||| |||||||||| Sbjct 94486 CACCGTTGGC-AAGCTCACGTCCATGCACTTTTATGCCTGGAAAAAGGGCCTCAAGACGG 94428 Query 55905 GTATGTACTATCTGCGGACCCGCGCC 55930 | |||||||| ||||| ||||| || Sbjct 94427 GCATGTACTACCTGCGCTCCCGCCCC 94402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214980810200