Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq45 122 5e-23 seq30 100 2e-16 seq94 91.5 9e-14 seq56 82.4 5e-11 >seq45 Length=303593 Score = 122 bits (134), Expect = 5e-23 Identities = 170/237 (72%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | ||||| ||||| ||| |||||||| ||||| || || Sbjct 87570 GTTGCCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTC 87511 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 ||||| || || ||||||| | |||||| |||||||| || | ||||||||||| || Sbjct 87510 GGAAAGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGG 87451 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTT-----TTAACGATAAAATTGTGTCTTCG 34650 || | || ||||||||| ||||||||| | || |||| ||| | || Sbjct 87450 AGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCG----GACG 87395 Query 34651 CTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || |||| || || || || ||||| || || || ||||| ||||||||| Sbjct 87394 AT-TCGACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87339 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || |||||| ||||||||| ||||| || || || || || || Sbjct 86645 AGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGG 86586 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || |||||||| || || || || | |||||| Sbjct 86585 CCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCC 86526 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 |||||| ||| || || || Sbjct 86525 TTGTCTTGGATTTTCTGCTT 86506 >seq30 Length=460931 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| || ||| ||||||||||||||| || || || || || || Sbjct 195755 AGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGG 195814 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || ||||| || || | ||||| ||||| || || | || ||| Sbjct 195815 CCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCC 195874 Query 34609 TTGTCTGTGATCTTTTGTT-----TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCA 34663 |||||| |||||||| | || |||| ||| | || | || ||||||| Sbjct 195875 TTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAATCG----GACGAT-TCGACTTCCA 195929 Query 34664 CGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | ||| || ||||| || ||||| Sbjct 195930 AAGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || | ||| ||||||||| ||||| || || || || || || Sbjct 196211 AGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGG 196270 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| ||||| || || | |||||| Sbjct 196271 CCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCC 196330 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||||| || | ||| | ||| ||| || |||| || Sbjct 196331 TTGTCTTGAATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTG 196390 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | || || || ||||| ||||||||| Sbjct 196391 ATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTTG 196432 >seq94 Length=66050 Score = 91.5 bits (100), Expect = 9e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||||| |||||||| ||||| || || || | || || Sbjct 22808 AGACGAAGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGG 22867 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || ||||| || || || ||||| ||||| || || | |||||| Sbjct 22868 CCATCTTCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCC 22927 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 |||||| ||||||||| || Sbjct 22928 TTGTCTTGGATCTTTTGCTT 22947 >seq56 Length=224513 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | | |||| ||||| || | || ||||||||| ||||| ||||| || Sbjct 32426 GCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGA 32485 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || | ||| || |||||||| || | || || || || ||||| Sbjct 32486 CAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGG 32545 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | |||||||||||| ||||||||| || Sbjct 32546 AATACCCTCCTTGTCTTGGATCTTTTGCTT 32575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729028470717