Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq45 178 1e-39 seq30 172 5e-38 seq56 145 7e-30 seq1 127 2e-24 seq94 113 4e-20 >seq45 Length=303593 Score = 178 bits (196), Expect = 1e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || ||| | || || ||| |||| Sbjct 87111 CATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTC 87170 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| || || | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 87171 CGACTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCA 87230 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| |||||||||||| | ||| | || |||||||| Sbjct 87231 GCAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACAA 87290 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||||| || ||||| | ||| | || |||||||| Sbjct 87291 CATCCAGAAGGAATCCACCTTGCACTTGGTCCTCCGTCTCCGTGGTGGCAT 87341 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || ||| | || || ||| |||| Sbjct 87339 CATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTC 87398 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| || || || | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 87399 CGATTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCA 87458 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||||||||||||||| | || ||||||| ||||| Sbjct 87459 ACAGCGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTTTCCGACTACAA 87518 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| |||||||| || || | || ||||| | ||| | || || |||| Sbjct 87519 CATCCAAAAGGAATCCACGCTCCACTTGGTCCTCCGTCTCCGTGGCGGCA 87568 Score = 168 bits (186), Expect = 6e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| | || || || || ||||| |||| Sbjct 86883 CATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTCGAGGTGGAGTCGTC 86942 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| ||||| | ||||| || |||||||||||||| |||||||| || || || || Sbjct 86943 CGACTCCATTGACAATGTCAAGCAGAAAATTCAAGACAAGGAAGGCATCCCTCCTGACCA 87002 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||||||| |||||||| || | || | || || ||||| Sbjct 87003 GCAGCGTTTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGCACGCTCTCTGACTACAA 87062 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | || |||||| | || |||| |||||||| Sbjct 87063 CATTCAAAAGGAATCCACGCTCCACTTGGTTCTCCGCCTGCGCGGTGGCAT 87113 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || |||||| | || ||||| || || || ||||| Sbjct 86428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCC 86487 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || || | ||||| || ||||| |||||||| || ||||| || |||||||| Sbjct 86488 GATTCTATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATCAG 86547 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||||| || |||| ||| | || | || || |||||| Sbjct 86548 CAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAAC 86607 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || |||||| ||||| | || ||||| || Sbjct 86608 ATCCAAAAGGAGTCCACTCTGCACTTGGTTCTGCGTCTCCGTGGTGGTAT 86657 >seq30 Length=460931 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | || ||| | ||||| ||| ||||| Sbjct 195972 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCC 195913 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| || | ||||| ||||| ||||||||||| |||||||| || || || || Sbjct 195912 GATTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 195853 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| |||||||||||| | || | || || |||||| Sbjct 195852 CAGCGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAAC 195793 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | |||||||| | ||| | || ||||| || Sbjct 195792 ATTCAAAAGGAGTCCACGCTGCATTTGGTGCTCCGTCTCCGTGGTGGTAT 195743 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| |||||| | || || || || || || |||| Sbjct 196200 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 196141 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | ||||| ||||| || || ||||| |||||||| || ||||| || Sbjct 196140 GATTCCATTGATAATGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 196081 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| ||||||||||| | ||| | || ||||||||| Sbjct 196080 CAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGATTACAAC 196021 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 196020 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 195971 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||| || |||||| | || ||||| || || || |||| Sbjct 196429 CATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTC 196370 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | ||||| ||||| ||||||||||| || || || || ||||| || Sbjct 196369 GGACTCTATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGACCA 196310 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || || | || | || || ||||| Sbjct 196309 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTACAA 196250 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| || || || ||||| | ||| | || ||||| || Sbjct 196249 CATCCAAAAGGAGTCCACGTTGCACTTGGTGCTCCGTCTCCGTGGTGGTAT 196199 >seq56 Length=224513 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 ||| |||||| || || || || || || || |||||| | || || ||||| || ||| Sbjct 32658 ACGTCATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAAT 32599 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 |||| || || ||||| | || || ||||| || |||||||| || || || || || | Sbjct 32598 CGTCGGATTCAATTGATAATGTGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTG 32539 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 |||| || || | || | |||||||| |||||||| || | || | || |||| Sbjct 32538 ATCAGCAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATT 32479 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||||||||| || || |||| |||| ||||| || ||||| Sbjct 32478 ACAACATCCAAAAGGAGTCGACGTTGCACCTGGTGCTGCGATTGCGCGGCGGCAT 32424 >seq1 Length=1252801 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||||||||| | ||||| ||||| || |||||||| ||||| || || ||||| Sbjct 333675 TCTGACTCGATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCCGAC 333616 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| || || | ||| ||||| || ||||||||| | ||| | ||||| ||| Sbjct 333615 CAGCAGCGCTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCTTGTCCGACTAC 333556 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 333555 AACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 333503 >seq94 Length=66050 Score = 113 bits (124), Expect = 4e-20 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||| || || | ||||| ||||| || |||||||| || ||||| || || || Sbjct 22968 TCTGACTCTATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 22909 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTA 27163 || ||||| || || | ||||||||| ||||||||||| | || |||| || || || Sbjct 22908 CAGCAGCGCTTGATCTTCGCCGGCAAGCAATTGGAAGA-TGGCCGCACGTTGTCTGACTA 22850 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||||| | || ||||| | ||| | || ||||| || Sbjct 22849 CAACATCCAAAAGGAATCGACTCTCCACTTGGTCCTTCGTCTCCGTGGTGGTAT 22796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917589964480