Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq45 111 1e-19 seq56 107 1e-18 seq1 93.3 3e-14 seq30 89.7 4e-13 >seq45 Length=303593 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || ||||| ||||| || || || | || ||||| || Sbjct 86428 ATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCC 86487 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| || ||||| ||||| || || |||| || | Sbjct 86488 GATTCTATCGACAAC--GTCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATC 86545 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||||||||| || || |||| |||| |||| |||| || |||| Sbjct 86546 AGCAGCGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACA 86605 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||| |||| |||||| ||||| | ||||| || Sbjct 86606 ACATCCAAAAGGAGTCCACTCTGCACTTGGTTCTGCGTCTCCGTGGTGG 86654 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | || || || || || | || |||||| || Sbjct 87112 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87171 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||||| || ||||| ||||| |||| || | Sbjct 87172 GACTCCATCGACAAT--GTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCCGACC 87229 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || |||||||| |||| |||| |||||| ||||||| Sbjct 87230 AGCAGCGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACCTTGTCTGATTACA 87289 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| ||||| ||||| | ||| | ||||| ||| Sbjct 87290 ACATCCAGAAGGAATCCACCTTGCACTTGGTCCTCCGTCTCCGTGGTGGC 87339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | || || || || || | || |||||| || Sbjct 87340 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTTTGGAGGTCGAATCGTCC 87399 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||||| || ||||| ||||| | || || | Sbjct 87400 GATTCCATCGACAAT--GTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCCGACC 87457 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | || || | || |||||||| ||||||||||| |||| |||| |||| ||||| ||| Sbjct 87458 AACAGCGCCTCATCTTTGCCGGCAAACAATTGGAAGACGGCCGCACGCTT-TCCGACTAC 87516 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 ||||||||||| || ||| | || ||||| | ||| | ||||||||| || Sbjct 87517 AACATCCAAAAGGAATCCACGCTCCACTTGGTCCTCCGTCTCCGTGGCGGCAAC 87570 >seq56 Length=224513 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || ||||| || || ||| |||| || ||| | Sbjct 32653 ATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCG 32594 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||||| || ||||| || ||| ||||| || | Sbjct 32593 GATTCAATTGATAAT--GTGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATC 32536 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || |||||||| || |||||||| || | |||| |||| ||||||| Sbjct 32535 AGCAACGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACA 32476 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| || ||||| |||| |||| ||||| |||||| Sbjct 32475 ACATCCAAAAGGAGTCGACGTTGCACCTGGTGCTGCGATTGCGCGGCGGC 32426 >seq1 Length=1252801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 27852 CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCA 27911 |||| ||||| ||||| ||||| || ||||| |||||| |||| || ||||| Sbjct 333668 CGATTGACAAT--GTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCCGACCAGCA 333611 Query 27912 ACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACAT 27971 || || || || || || || || ||||| |||| |||| ||||||||| |||||||| Sbjct 333610 GCGCTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCTTGTCCGACTACAACAT 333551 Query 27972 CCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 333550 CCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGG 333506 >seq30 Length=460931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || ||||| ||||| || || || | || ||||| Sbjct 196431 AACATGCAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCG 196372 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | ||||| ||||| ||||| || ||||| || ||| |||| | Sbjct 196371 TCGGACTCTATTGACAAT--GTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCG 196314 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || |||||||| || || | || || | |||| |||| || | Sbjct 196313 ACCAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACT 196254 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| ||| ||||| ||||| | ||| | ||||| || Sbjct 196253 ACAACATCCAAAAGGAGTCCACGTTGCACTTGGTGCTCCGTCTCCGTGGTGG 196202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861753776123