Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq30 176 1e-38 seq45 161 2e-34 seq56 158 3e-33 seq1 132 1e-25 seq94 131 4e-25 >seq30 Length=460931 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| || ||||||||||| || || | || || | ||||| Sbjct 195533 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCC 195592 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||||||||| || ||||| ||||| | |||||||||||| Sbjct 195593 TCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCC 195652 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || ||||||| || || || |||||||| ||||| ||| Sbjct 195653 TGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATGGTC 195712 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| ||||| | |||||| Sbjct 195713 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || || || ||||||||||| ||||| | | ||| | |||||| Sbjct 195989 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCT 196048 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| || ||||| ||||| || ||||| ||||| | |||||||||||| Sbjct 196049 TCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCC 196108 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || || |||| || || || |||||||| ||||| ||| Sbjct 196109 TGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTC 196168 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| ||||| | |||||| Sbjct 196169 TTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||| ||||||||||| || || | || || | ||||| || ||||||||||| Sbjct 196232 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 196291 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||||||||| || ||||| || |||| || |||||||| || |||||||| || Sbjct 196292 GCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTG 196351 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || | ||| || || ||||| |||||||| ||||| || ||||||||| Sbjct 196352 ACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTC 196411 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | ||||| || Sbjct 196412 TTGACGAAAATTTGCATGTT 196431 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| ||||| ||||| || || | || || | || ||||||| ||| Sbjct 195770 TGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCCAATTGC 195829 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || ||||| || |||||||| |||| ||||||||||| || |||||| Sbjct 195830 TTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 195889 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || ||||| | || || ||| || || | |||||| ||||| || ||| Sbjct 195890 TGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTGCCAGTG 195949 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 195950 AGCGTCTTGACAAAGATTTGCAT 195972 >seq45 Length=303593 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| || ||||||||||| || || | || || | ||||| Sbjct 86867 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCC 86808 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||||||||| | ||||||||||| Sbjct 86807 TCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86748 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || ||||||| || || || ||||| | ||||| ||| Sbjct 86747 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTC 86688 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 86687 TTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| || ||||||||||| || || | ||| || | || ||| Sbjct 87551 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCT 87492 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || ||||| || ||||| ||||| |||||||| ||||| | ||||||||||| Sbjct 87491 TCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCT 87432 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || ||||||| || || ||| ||||| | |||||| ||| Sbjct 87431 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTC 87372 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 87371 TTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||||| || || |||||||| ||||| | | ||| | || ||| Sbjct 87323 AGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCT 87264 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| || ||||| ||||| || ||||| || |||| ||||||||||| Sbjct 87263 TCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCT 87204 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || || || ||||||| ||| || ||| ||||| | |||||| ||| Sbjct 87203 TGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTC 87144 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 87143 TTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| ||||||||||| || || | || || | || || Sbjct 86639 AGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCC 86580 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || | || || || || || |||| || |||||||| Sbjct 86579 TCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCT 86520 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || ||||| ||||| | || || || ||||| |||||||| ||| Sbjct 86519 TGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATGGTC 86460 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | ||||| Sbjct 86459 TTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || ||||| ||||| || || | || || | ||||| Sbjct 87095 AGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCC 87036 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| ||||| || | || || ||||||||||| | ||||||||||| Sbjct 87035 TCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86976 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || || || |||| ||| || || |||||||| ||||| ||| Sbjct 86975 TGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTC 86916 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 86915 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq56 Length=224513 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | || ||||| ||||||||||| ||||||| || || | ||||| Sbjct 32442 AGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCATCC 32501 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| || ||||| || ||||| || ||||| |||| || |||||||| Sbjct 32502 TCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTGTCT 32561 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| ||||| || || || | || || ||||||||| || ||||| ||| Sbjct 32562 TGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTGATGGTC 32621 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 32622 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq1 Length=1252801 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || |||||||| || |||||||| || || | | ||| | || ||| Sbjct 333521 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCT 333580 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| | ||| || ||||| || |||| ||||||||||| Sbjct 333581 TCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCT 333640 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 ||||||||||| || || || || || | ||||||||| Sbjct 333641 TGGATCTTTTGCTTGACATTGTCAATCGAGTCAGAGCT 333678 >seq94 Length=66050 Score = 131 bits (144), Expect = 4e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||| || || ||||||||||| || || | | || | |||||| Sbjct 22814 AGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCT 22873 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| |||||||| | ||| || |||||||| || | || |||||||| Sbjct 22874 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 22933 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTT 211062 ||||||||||| || || || ||||| | ||||||||||| Sbjct 22934 TGGATCTTTTGCTTGACATTGTCGATAGAGTCAGAGCTTT 22973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149787106385