Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq30 100 2e-16 seq45 84.2 2e-11 >seq30 Length=460931 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| |||||| ||| ||||| || || || || | || || || |||| || Sbjct 195763 CACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTC 195822 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | || ||||| || || || || ||||||||||| | ||| | || || ||||| Sbjct 195823 CAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 195882 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || || |||| | | | || |||| ||| || || |||| ||||| | || Sbjct 195883 AATCTTTTGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTT 195942 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| || |||||||||||||| Sbjct 195943 GCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || |||||| || ||||| || || || |||| || || || | || || Sbjct 195536 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCG 195595 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| ||||| ||||||||||||| || | | || |||||| | Sbjct 195596 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGG 195655 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || |||| | | | | ||| |||||| || || | ||||| | || Sbjct 195656 ATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATGGTCTTG 195715 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || |||||||| ||||| Sbjct 195716 CCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | |||| ||| ||||| || || || || | || || || | || || Sbjct 196219 CACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTC 196278 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| ||||| ||||||||||||| ||| | | ||| ||||| Sbjct 196279 GAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTG 196338 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || || |||| | | | | || |||||| || |||| ||||| | || Sbjct 196339 AATCTTTTGCTTGACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTT 196398 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || || || || || |||||||| || Sbjct 196399 GCCAGTGAGAGTCTTGACGAAAATTTGCATGTT 196431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || || || ||||| || || ||||| | |||| || || | || || Sbjct 195992 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAG-GTGCGGCCATCTTC 196050 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | || ||||| ||||| || || ||||||||||||| || | || || |||||| Sbjct 196051 CAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTG 196110 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || |||| | | | | ||| |||||| || || | |||||| | || Sbjct 196111 GATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTT 196170 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || ||||||||||| ||||| Sbjct 196171 GCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq45 Length=303593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || |||||| || ||||| || || || || | || || || | || || Sbjct 86864 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCG 86805 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | || | || || ||||| | Sbjct 86804 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 86745 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || |||| | | | | |||| ||||||||| |||| ||||| | || Sbjct 86744 ATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCTTG 86685 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| || || || || ||||| Sbjct 86684 CCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || |||||| || ||||| || || || || | || || || | || || Sbjct 87092 ACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCC 87033 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | || ||||| || || || | |||||||||||| | || | || || ||||| Sbjct 87032 AATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGA 86973 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTA-TCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||||| |||| | | | || | | ||| ||||||||| || | ||||| | || Sbjct 86972 ATTTTCTGCTTGA-CATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTT 86914 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| || || ||||||||||| Sbjct 86913 GCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544819972037