Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq30 168 2e-36 seq45 158 3e-33 seq56 141 2e-28 seq1 138 3e-27 seq94 127 5e-24 seq53 96.9 8e-15 >seq30 Length=460931 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | |||||| |||||||| ||||||| ||||| |||| || || Sbjct 195524 CGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTG 195583 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || || |||||||| || || |||||||| || |||||| Sbjct 195584 CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCT 195643 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||||||||| ||| ||||||| || || | || || || | Sbjct 195644 TCCTTGTCCTGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGG 195703 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||||||| || Sbjct 195704 GTGATGGTCTTGCCAGTCAAAGTCTT 195729 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || ||||| ||||||| |||||||| | ||| || | |||||| Sbjct 195989 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCGGCCATCT 196048 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| || || || |||||||| || || ||||||||||| Sbjct 196049 TCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCC 196108 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| ||| || |||| || || | || || || | |||||| ||| Sbjct 196109 TGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTC 196168 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || Sbjct 196169 TTGCCAGTCAAAGTCTT 196185 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| || ||||||| ||||| || | || || | ||||| || |||||||| || Sbjct 196232 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 196291 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || |||||||| || || |||||||| |||||||| ||||||||||| ||||||||||| Sbjct 196292 GCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTG 196351 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || || | ||| || | || || || | ||||| |||||||| || | ||| Sbjct 196352 ACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTC 196411 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | |||||| || Sbjct 196412 TTGACGAAAATTTGCATGTT 196431 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||| || ||||| | ||||| || | | || | || ||||| | ||| Sbjct 195770 TGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTCCAATTGC 195829 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || || || || ||||| || ||||| |||||||||||||| |||||| Sbjct 195830 TTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 195889 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| ||| ||||| | || || | ||| || || || ||||| |||||||| || Sbjct 195890 TGCTTGACATTGTCGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTCTTGCCAGTG 195949 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | || | |||||| Sbjct 195950 AGCGTCTTGACAAAGATTTGCAT 195972 >seq45 Length=303593 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | |||||||| || |||| |||||||| | ||| || | || ||| Sbjct 87323 AGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCGTCT 87264 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| || || || |||||||| ||||| |||||||||||| Sbjct 87263 TCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCT 87204 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| ||| ||||||| ||| || | ||| || || || ||||| ||| Sbjct 87203 TGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTC 87144 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || Sbjct 87143 TTGCCGGTCAAGGTCTT 87127 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| |||||||| ||||||| ||||| |||| | || | || ||| Sbjct 87551 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCT 87492 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || || ||||| || || ||||||||||| || || |||||||||||| Sbjct 87491 TCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCT 87432 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| ||| ||||||| || || | ||| || || || ||||| ||| Sbjct 87431 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTC 87372 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || Sbjct 87371 TTGCCGGTCAAGGTCTT 87355 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| |||||||| ||||||| ||||| || | | || | ||||| Sbjct 86867 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCC 86808 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || || || |||||||||||| Sbjct 86807 TCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86748 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| ||| ||||||| || || | ||||| || || ||||| ||| Sbjct 86747 TGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTC 86688 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 86687 TTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| |||||||| || ||||||| ||||| || | || || Sbjct 86649 ACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGT 86590 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || || || | || || || ||||| ||||| || Sbjct 86589 GCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCC 86530 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || ||||| || ||||| | || || | || || || | Sbjct 86529 CTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAG 86470 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| || | ||| | |||||| Sbjct 86469 AGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| |||||||| ||||| | ||||| || | | || | ||||| Sbjct 87095 AGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCC 87036 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || ||||| || | || || ||||| || || || |||||||||||| Sbjct 87035 TCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 86976 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||| ||| || |||| ||| || | ||||| || | ||||| ||| Sbjct 86975 TGAATTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTC 86916 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | |||||| Sbjct 86915 TTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 86884 >seq56 Length=224513 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || ||| || ||||| | || || || ||||||| |||||||| | || || | || Sbjct 32438 TCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCC 32497 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | ||||| || || ||||| |||||||| || || ||||||||||| ||||| Sbjct 32498 ATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTT 32557 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||||||||||||| || || | || || | ||| || || | ||||| Sbjct 32558 GTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTGAT 32617 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || | || || | ||| | |||||| Sbjct 32618 GGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCAT 32653 >seq1 Length=1252801 Score = 138 bits (152), Expect = 3e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| ||||| || || |||| ||||| |||| ||| || | || ||| Sbjct 333521 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCT 333580 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| | || || |||||||| |||||||||||||||||| Sbjct 333581 TCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCT 333640 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 |||||||||||||| ||| || || | ||| ||| Sbjct 333641 TGGATCTTTTGCTTGACATTGTCAATCGAGTCAGAG 333676 >seq94 Length=66050 Score = 127 bits (140), Expect = 5e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||| ||||| ||||||| ||||| || | ||| || | |||||| Sbjct 22814 AGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCT 22873 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || |||||||| | || || ||||| || || || || ||||||||| Sbjct 22874 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 22933 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTT 225661 |||||||||||||| ||| ||||| | ||| ||| ||| Sbjct 22934 TGGATCTTTTGCTTGACATTGTCGATAGAGTCAGAGCTTT 22973 >seq53 Length=260392 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 371373 TTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGC 371432 |||||| | ||| | ||||| |||||||||| || || |||||||||||||| || || Sbjct 240885 TTTATGGAAAGACATTCCAGGAGCTCTCATATTTAAAATAGTAGTAATAAAGTTCATTGC 240826 Query 371433 GCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACC 371492 |||| | |||||| ||||| | | ||| | |||||| || |||||||| || || || Sbjct 240825 TCCTAACATAGAAGAGATACCAGATAAATGAAGACTAAAAATAGCTAAATCTACTGATCC 240766 Query 371493 GCCGGAGTGAG 371503 || || |||| Sbjct 240765 ACCTGAATGAG 240755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528923383406