Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq30 120 7e-22 seq45 109 1e-18 seq56 89.7 1e-12 seq94 87.8 4e-12 >seq30 Length=460931 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 195982 GAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGTGCG 196041 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || ||||| ||||| || | ||||||||| | | ||| ||||| Sbjct 196042 GCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTC 196101 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || ||||| |||||| | || | | || || ||| || || || || Sbjct 196102 CTTGTCCTGGATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGT 196161 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | |||||| || |||| |||||| Sbjct 196162 GATGGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| |||||||||||||| || | | || | ||||| || || || ||| Sbjct 196232 GTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 196291 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || |||||||| | ||||||||| | | || || ||||| |||||||| ||||| ||| Sbjct 196292 GCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTGAATCTTTTGCTTG 196351 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||| || ||| || || ||||| || || ||||| ||||||||| Sbjct 196352 ACATTGTCAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTC 196411 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | ||||| || Sbjct 196412 TTGACGAAAATTTGCATGTT 196431 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || || |||||||||||||| |||| | || | ||||| Sbjct 195533 AGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCC 195592 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| |||||||| | ||||||||| | | ||| |||||||| || Sbjct 195593 TCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCC 195652 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| |||||| | || | | || || ||| || || || || || || Sbjct 195653 TGGATCTTTTGCTTGACATTGTCGATGGAATCCGACGACTCGACCTCGAGGGTGATGGTC 195712 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 195713 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 >seq45 Length=303593 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || || || |||||||||||||| || | | || | ||||| Sbjct 86868 GAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATC 86809 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||| || || | ||||||||| | | ||| |||||||| || Sbjct 86808 CTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 86749 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || ||||| |||||| | || | | || || ||| || || | || || || Sbjct 86748 TTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGACTCCACCTCCAAGGTGATGGT 86689 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||| | |||||| Sbjct 86688 CTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || ||||| |||||||| || | | || | ||||| || | Sbjct 87090 CAAG-TGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCCA 87032 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||| || | | ||||||||| | | ||| |||||||| ||||||| Sbjct 87031 ATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGAA 86972 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || |||||| | || | | ||| || ||| || || || || || || |||| Sbjct 86971 TTTTCTGCTTGACATTGTCAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCTTGC 86912 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| ||||| Sbjct 86911 CAGTGAGCGTCTTGACGAAGATTTGCAT 86884 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || || || |||||||||||||| |||| | || | Sbjct 87558 GAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCG 87499 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| | ||| ||||| ||||| || | ||| ||||| | | ||| ||||| Sbjct 87498 GCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTC 87439 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || ||||| |||||| | || | | || || || || || | ||| Sbjct 87438 CTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAATCGGACGATTCGACCTCCAAAGT 87379 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| || |||| |||||| Sbjct 87378 GATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87340 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || | || || || || |||||||||||||| | || || | Sbjct 87330 GAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCG 87271 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| | || ||||| ||||| || | ||||||||| | | || ||||| Sbjct 87270 GCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTC 87211 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || ||||| |||||| | || | | ||| || || || || | ||| Sbjct 87210 CTTGTCTTGGATCTTTTGCTTGACATTGTCGATGGAGTCGGACGATTCGACCTCCAAAGT 87151 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| || |||| |||||| Sbjct 87150 GATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 87112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| |||||||||||||| || | | || | || || || | Sbjct 86634 CAAG-TGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCA 86576 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| || || | | |||||| || | | || || ||||| ||||| | Sbjct 86575 GCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGGA 86516 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||||| | || | || || ||| || || ||||| || || |||| Sbjct 86515 TTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATGGTCTTGC 86456 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| ||||| | ||||| Sbjct 86455 CAGTGAGAGTCTTGACGAAAATTTGCAT 86428 >seq56 Length=224513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| ||||||||||||||||| | | || | ||||| || | || ||| Sbjct 32457 GTCGACTCCTTTTGGATGTTGTAATCCGACAGCGTGCGGCCATCCTCCAATTGCTTGCCG 32516 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| || | ||||| || | || || || ||||| ||||| || ||||| || Sbjct 32517 GCAAAGATGAGTCGTTGCTGATCAGGCGGAATACCCTCCTTGTCTTGGATCTTTTGCTTC 32576 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | || || || || ||||| || || || ||||| ||||| ||| Sbjct 32577 ACATTATCAATTGAATCCGACGATTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTC 32636 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||||| ||||| Sbjct 32637 TTGACGAAGATTTGCAT 32653 >seq94 Length=66050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| || || |||||||||||||| || | || || | |||||| Sbjct 22814 AGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCT 22873 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||||||||| | | ||||||||| | | ||| || ||||| ||| Sbjct 22874 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 22933 Query 152013 TGAATTTTTTGTTTGACA 152030 || || ||||| |||||| Sbjct 22934 TGGATCTTTTGCTTGACA 22951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818597283979