Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq45 143 2e-29 seq56 140 2e-28 seq30 129 4e-25 seq1 91.5 1e-13 >seq45 Length=303593 Score = 143 bits (158), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| |||||| |||||||| |||||||| || | ||| ||| | || ||| Sbjct 87092 ACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCC 87033 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||| || |||||||||||||| || | ||| | |||||||| || Sbjct 87032 AATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGA 86973 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || |||||||| || ||| | |||| ||||| || |||||||| | || || |||| Sbjct 86972 ATTTTCTGCTTGACATTGT--CAATGGAGTCGGACGACTCCACCTCGAGTGTGATGGTCT 86915 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||| ||||| ||||||||||||||| Sbjct 86914 TGCCAGTGAGCGTCTTGACGAAGATTTGCATG 86883 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||||||||||||||| || | || ||| |||| ||| Sbjct 86636 ACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCC 86577 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||| ||||||||||||||||| | || | || ||||| || Sbjct 86576 AGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGG 86517 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || |||||||| | | | || | |||| || || ||||||| || || ||||| Sbjct 86516 ATTTTCTGCTTGACGTTGTCGATAGAATCGGACGACTCGACCTCCAGAGTGATGGTCTTG 86457 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| Sbjct 86456 CCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| |||||| ||||||||||||||||| || | ||| ||| | || || Sbjct 86864 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCG 86805 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | |||||||| || | ||| | |||||||| || Sbjct 86804 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 86745 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| || ||| | |||| |||| || |||||||||| || || |||| Sbjct 86744 ATCTTTTGCTTGACATTGT--CGATGGAATCGGACGACTCCACCTCCAAGGTGATGGTCT 86687 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| ||||| || ||||| Sbjct 86686 TGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| |||||| ||||||||||||||||| |||| || ||| |||| ||| Sbjct 87548 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCC 87489 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || ||||||||||| | ||||| || || | ||| | |||||||| || Sbjct 87488 AATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGG 87429 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| || ||| | |||| |||| ||||| ||||||| || || |||| Sbjct 87428 ATCTTTTGCTTGACATTGT--CGATGGAATCGGACGATTCGACCTCCAAAGTGATGGTCT 87371 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| || ||||| |||||| Sbjct 87370 TGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87339 Score = 120 bits (132), Expect = 2e-22 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| | ||| ||||| |||||||||||||| | | || || || |||| || Sbjct 87320 ACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGC-CGTCTTC 87262 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||||||||| | |||||||| || | || | |||||||| || Sbjct 87261 CAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTG 87202 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||||| || ||| | |||| ||||| ||||| ||||||| || || ||| Sbjct 87201 GATCTTTTGCTTGACATTGT--CGATGGAGTCGGACGATTCGACCTCCAAAGTGATGGTC 87144 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | |||||| || ||||| |||||| Sbjct 87143 TTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87111 >seq56 Length=224513 Score = 140 bits (154), Expect = 2e-28 Identities = 178/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | || || || ||||||||| | ||| ||||||||||||||||||||| Sbjct 32424 ATGCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCC 32483 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || ||| | || |||| ||||| ||||||||||| | || |||||||| | Sbjct 32484 GACAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGC 32543 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | ||| ||||| || ||||| ||||||| | | || | || | ||||| Sbjct 32544 GGAATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCAATTGAATCCGACGATTCA 32603 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT-GAAT 44346 ||||| | || || ||||| || ||||| ||||| |||||||||||||||| || ||| Sbjct 32604 ACCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCATGACGTGGAAA 32663 Query 44347 GAAA 44350 |||| Sbjct 32664 GAAA 32667 >seq30 Length=460931 Score = 129 bits (142), Expect = 4e-25 Identities = 161/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | |||| |||||||||||||||||| || | || ||| | || || Sbjct 196219 CACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTC 196278 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||| | |||||||| || | || | ||| ||||| || Sbjct 196279 GAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCTTG 196338 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||||| || ||| | || | ||| | || || ||||||| || || ||| Sbjct 196339 AATCTTTTGCTTGACATTGT--CAATAGAGTCCGACGACTCGACCTCCAGAGTGATGGTC 196396 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGA 44344 || || ||||| ||||| ||||| ||||||||| || || Sbjct 196397 TTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTTGGGA 196435 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| |||||| ||||||||||||||||| |||| || ||| | || || Sbjct 195536 ACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCG 195595 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||| || | ||| | ||||||||| ||| Sbjct 195596 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGG 195655 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| || ||| | |||| || | || || ||||| | || || |||| Sbjct 195656 ATCTTTTGCTTGACATTGT--CGATGGAATCCGACGACTCGACCTCGAGGGTGATGGTCT 195713 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||| || ||||| ||||| Sbjct 195714 TGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| || |||||| ||||||||| |||||||| || | ||| ||| |||| || Sbjct 195763 CACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAGAGCGTGCGGCCGTCTTC 195822 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || || | |||||||| || | || | |||||||| || Sbjct 195823 CAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 195882 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||||| || ||| | || | |||| ||||| || |||| || || ||| Sbjct 195883 AATCTTTTGCTTGACATTGT--CGATCGAATCGGACGATTCGACTTCCAAAGTGATGGTC 195940 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| || ||||||||||| Sbjct 195941 TTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| ||| || || |||||||||||||||||||| | | || | ||| | || || Sbjct 195992 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAAGGT-GCGGCCATCTTC 196050 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||||||||| | |||||||| || | ||| | |||||||| ||| Sbjct 196051 CAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTG 196110 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | |||| || | || || ||||| | ||| || ||||| Sbjct 196111 GATCTTTTGCTTGACATTATCAATGGAATCCGACGACTCGACCTCGAGCGTGATGGTCTT 196170 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || ||||| ||||| Sbjct 196171 GCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq1 Length=1252801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||| |||||| ||||||||||| |||| | || | ||| |||| || Sbjct 333524 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGGCCGTCTTC 333582 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||| |||||||| || | || | ||||||||| || Sbjct 333583 CAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATACCTTCCTTGTCTTG 333642 Query 44248 TATCTTCTGCTT 44259 ||||| ||||| Sbjct 333643 GATCTTTTGCTT 333654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989746279933