Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq30 159 8e-34 seq45 132 1e-25 seq56 120 7e-22 seq94 107 5e-18 >seq30 Length=460931 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || |||||||||||||| || || || Sbjct 195741 CAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGAT 195682 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| || ||||| |||||||| |||||||| ||||| |||||||| |||||||| Sbjct 195681 TCCATCGACAATGTCAAGCAAAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAGCAG 195622 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 195621 CGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCCGACTACAACATC 195562 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 195561 CAAAAGGAATCCACGCTCCA-CTTG 195538 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| || ||||| || || ||| Sbjct 196425 CAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCGGAC 196366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||||| ||||||||||| ||||| || || || || || |||||||| Sbjct 196365 TCTATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCCGACCAGCAG 196306 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || |||||||| ||||| | || || | || || ||| || Sbjct 196305 CGCCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGTCTGACTACAACATC 196246 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || |||| |||| Sbjct 196245 CAAAAGGAGTCCACGTTGCA-CTTG 196222 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || ||||| | || || ||| || || Sbjct 195969 CAAATCTTTGTCAAGACGCTCACTGGCAAGACCATCACTTTGGAAGTCGAATCGTCCGAT 195910 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||| ||||||||||| ||||| ||||| || || || |||||||| Sbjct 195909 TCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAG 195850 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || | ||||| || | || || | || || ||| | Sbjct 195849 CGCCTCATTTTCGCCGGCAAGCAATTGGAAGACGGCCGCACGCTCTCTGACTACAACATT 195790 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || || |||||| Sbjct 195789 CAAAAGGAGTCCACGCTGCAT 195769 >seq45 Length=303593 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| ||||||||||| || ||| Sbjct 86887 CAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTCGAGGTGGAGTCGTCCGAC 86946 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || || ||||| || || ||||| ||||| ||||| |||||||| |||||||| Sbjct 86947 TCCATTGACAATGTCAAGCAGAAAATTCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 87006 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || || | || ||||| | || || | || || ||| | Sbjct 87007 CGTTTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGCACGCTCTCTGACTACAACATT 87066 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 87067 CAAAAGGAATCCACGCTCCA-CTTGGTT 87093 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| || ||||| || || || Sbjct 86431 CAAATTTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTCGAGTCGTCCGAT 86490 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || || || || ||||| || || || || || || ||||| Sbjct 86491 TCTATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAGGGCATTCCCCCCGATCAGCAG 86550 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || ||||| || || || | || || | || || ||| || Sbjct 86551 CGTTTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAACATC 86610 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || ||||| |||| || Sbjct 86611 CAAAAGGAGTCCACTCTGCA-CTTGGTT 86637 >seq56 Length=224513 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 32650 CAAATCTTCGTCAAGACGCTCACTGGCAAGACCATCACACTTGAGGTTGAATCGTCGGAT 32591 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || |||||||| || ||||| || || || || || || |||||| Sbjct 32590 TCAATTGATAATGTGAAGCAAAAGATCCAAGACAAGGAGGGTATTCCGCCTGATCAGCAA 32531 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || || | || ||||| | || || | ||||| ||| || Sbjct 32530 CGACTCATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACGCTGTCGGATTACAACATC 32471 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || |||| || || Sbjct 32470 CAAAAGGAGTCGACGTTGCACCTGGT 32445 >seq94 Length=66050 Score = 107 bits (118), Expect = 5e-18 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 ||||||| ||| | ||||| || ||||| |||||||| || ||||| || || ||||| | Sbjct 22973 AAAGCTCTGACTCTATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAGGGCATCCCCC 22914 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| || | ||||||||||| || || | |||||||| | || | | | Sbjct 22913 CTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGTCTG 22854 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||| ||||||| ||||| || || || |||| Sbjct 22853 ACTACAACATCCAAAAGGAATCGACTCTCCA-CTTG 22819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728902001906