Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongronella_20sp._20w5_20[genbank_20GCA_5F001650995.1_202016-05-24] 149 sequences; 34,723,466 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq45 158 1e-33 seq30 149 6e-31 seq56 102 8e-17 seq94 89.7 5e-13 >seq45 Length=303593 Score = 158 bits (174), Expect = 1e-33 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| || |||||| ||||| || ||||| ||||| || Sbjct 86883 GCCACCGCGCAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCAGA 86824 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || |||||||||||||||||||| || |||||||| ||||| | || Sbjct 86823 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGG 86764 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||| ||| |||||||| || | || | | ||| ||||||| Sbjct 86763 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCG--ATGGAATCGGACGACTCC 86706 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || |||||||| |||||||||||||| Sbjct 86705 ACCTCCAAGGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 86656 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| ||| |||||| || ||||| ||||| || Sbjct 86654 CCACCACGGAGACGCAGAACCAAGTGCAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 86595 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||||||||| || |||| ||||| || || | |||| Sbjct 86594 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAAATCAAACGCTGCTGATCGGGGGGA 86535 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| ||||| ||| | | | || ||| |||||| || Sbjct 86534 ATGCCCTCCTTGTCTTGGATTTTCTGCTT-GACGTTGTCGATAGAATCGGACGACTCGAC 86476 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| |||||||| ||||| Sbjct 86475 CTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCAT 86428 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||| || |||||| ||||| |||||||| ||||| || Sbjct 87111 GCCACCGCGCAGGCGGAGAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTGTAGTCAGA 87052 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || | |||||||||||||| |||| ||||| ||||| | || Sbjct 87051 GAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGG 86992 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| ||||| ||||| || | | | | |||| |||||||| Sbjct 86991 GATGCCTTCCTTGTCTTGAATTTTCTGCTT-GACATTGTCAATGGAGTCGGACGACTCCA 86933 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || |||||||| ||||| || |||||| Sbjct 86932 CCTCGAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCATG 86883 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| |||| ||| |||||||| ||||| || || || Sbjct 87339 GCCACCACGGAGACGGAGGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAATCAGA 87280 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || | ||||||||||| || || |||||||| ||||| | ||| Sbjct 87279 CAAGGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGG 87220 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || |||||||| ||| |||||||| || | || | | |||| ||| || Sbjct 87219 AATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCG--ATGGAGTCGGACGATTCG 87162 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || || || || |||| ||||| || || ||||||||| Sbjct 87161 ACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87111 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||| || |||||| ||||| || ||||| |||||||| Sbjct 87567 GCCGCCACGGAGACGGAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGA 87508 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || | || |||||||| || || |||||||||||||| | || Sbjct 87507 AAGCGTGCGGCCGTCTTCCAATTGTTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGG 87448 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||| ||| |||||||| || | || | | ||| ||| || Sbjct 87447 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTGTCG--ATGGAATCGGACGATTCG 87390 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || || || || |||| ||||| || || ||||||||| Sbjct 87389 ACCTCCAAAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 87339 >seq30 Length=460931 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| |||| |||||| || ||||| ||||| || Sbjct 196202 CCACCACGGAGACGGAGCACCAAGTGCAACGTGGACTCCTTTTGGATGTTGTAGTCAGAC 196261 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||||||||| || || |||||||| ||||| | |||| Sbjct 196262 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGA 196321 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || |||||||| || | | | || ||| |||||| || Sbjct 196322 ATACCCTCCTTGTCTTGAATCTTTTGCTT-GACATTGTCAATAGAGTCCGACGACTCGAC 196380 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || || || || ||||| |||||||| |||||||| Sbjct 196381 CTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATTTGCATGTT 196431 Score = 141 bits (156), Expect = 9e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||||||||| |||||| |||||||| ||||| ||| Sbjct 195746 CCACCACGGAGACGGAGCACCAAATGCAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAG 195805 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || | |||||||||||||| || |||||||| ||||| | |||| Sbjct 195806 AGCGTGCGGCCGTCTTCCAATTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGGGGA 195865 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||| || |||||||| || | || | | ||| ||| || | Sbjct 195866 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCG--ATCGAATCGGACGATTCGA 195923 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || || |||||||| || || || ||||| Sbjct 195924 CTTCCAAAGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 195972 Score = 125 bits (138), Expect = 7e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| || |||||| ||||| || ||||| |||||||| Sbjct 195517 GCCACCGCGGAGACGCAGGACCAAGTGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGA 195576 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||||||||||||||| || || |||||||| ||||| | || Sbjct 195577 CAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGAGG 195636 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | ||||||||| ||| |||||||| || | || | | || |||||| Sbjct 195637 GATACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCG--ATGGAATCCGACGACTCG 195694 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| || || |||||||| Sbjct 195695 ACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 195744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||| || ||||| || || || Sbjct 195974 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAATCAGAC 196033 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | ||||||||||| || || |||||||| ||||| | || Sbjct 196034 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGG 196093 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTG---TCGCTCGACTC 41811 | || ||||||||| ||| |||||||| ||| | || || || |||||| Sbjct 196094 ATGCCTTCCTTGTCCTGGATCTTTTGCTT----GACATTATCAATGGAATCCGACGACTC 196149 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | ||| || || || || |||| ||||| || || |||||||| Sbjct 196150 GACCTCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 196200 >seq56 Length=224513 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| | || | |||||| |||| ||| |||||| || ||||| || || || Sbjct 32426 GCCGCCGCGCAATCGCAGCACCAGGTGCAACGTCGACTCCTTTTGGATGTTGTAATCCGA 32485 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||||||||| || || || || || || || | || Sbjct 32486 CAGCGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCAGGCGG 32545 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| |||||||||| | | | | | || ||| || | Sbjct 32546 AATACCCTCCTTGTCTTGGATCTTTTGCTTCACATTATCA-ATTGAATCCGACGATTCAA 32604 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || |||||||| ||||| || |||||| Sbjct 32605 CCTCAAGTGTGATGGTCTTGCCAGTGAGCGTCTTGACGAAGATTTGCATG 32654 >seq94 Length=66050 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||| || ||||| ||||| || Sbjct 22799 CCACCACGGAGACGAAGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAC 22858 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||||||||||| |||| |||||| ||||| | ||| Sbjct 22859 AACGTGCGGCCATCTTCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGG 22918 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || ||||||||| ||| |||||||| Sbjct 22919 ATGCCCTCCTTGTCTTGGATCTTTTGCTT 22947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303138958800