Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq34 149 1e-30 seq26 125 2e-23 seq71 105 1e-17 >seq34 Length=381833 Score = 149 bits (164), Expect = 1e-30 Identities = 216/303 (71%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 230384 AAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC 230443 |||||||| ||||| || | | |||| | || ||| | || || | || |||| Sbjct 49884 AAATCATTGTCGAAGCCGTCAAGATCGAACAAGAATTCTTAACCGATGCCTTGCC-TGTC 49826 Query 230444 GCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 ||||| ||||||||||| || | ||| | || ||||| |||||||| || ||||| Sbjct 49825 GCCTTGATTGGCATGAATGCCACGTTGATGTGCCAATACATTGAATTCGTTGCTGACCGT 49766 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 | | || || | || | || || |||||||| || | |||||||||| |||||| Sbjct 49765 CTGCTGGTCGCCTTGGGCCAAGAAAAGGTGTACAAATCCATCAACCCCTTTGACTTTATG 49706 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 || | ||||| || ||||| |||||||||||||| ||||||||||| ||| ||||| Sbjct 49705 GACATGATTTCTCTCCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTGTCTGATTATCAA 49646 Query 230623 AGGCCTGGTGTGATGAA------GCCCGAAGACAATATTTTTGCTATTGACGATGATTTT 230676 | ||||||| ||||| |||||||| || | ||| | |||| | ||||||| Sbjct 49645 CGTGCTGGTGTCATGAACAAGGCTCCCGAAGAAAAGACCTTTACCCTTGATGCTGATTTT 49586 Query 230677 TAA 230679 ||| Sbjct 49585 TAA 49583 >seq26 Length=465297 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 318997 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 319056 |||||||| | ||||||||||||||||| || | |||||| |||||||| | || | Sbjct 150019 TCTTCACCAGTTGCATAACGCCATTGGATGTATTCGTTGGGGGTCATGTCCAAGTGCTTT 150078 Query 319057 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 319116 || |||||||||||||| || || || || || |||| ||||| || || |||||||| Sbjct 150079 TCAATGTGGTGGAAAGCGTGTTGGGCAACATAGGCAATACGCAAGTTAGGGTGCTTCCAG 150138 Query 319117 ACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || |||||||| || ||| |||| || || | || ||| || | |||| ||| || Sbjct 150139 ACGGTACCGATGTCGGATTCGATTTCACCGGTCAACAACTTGATCAAGGTGGATTTACC 150197 >seq71 Length=978913 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 |||||| || | ||||| ||||||||||| |||| |||||| ||| || ||||| | Sbjct 739060 GTCTTCGCCAGTAGCATAGCGCCATTGGATGTACTCGTTGGGGGTCTCATCCAGATGTTT 739001 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 || ||||| ||||| || || || |||||||| |||| |||| || ||||| ||||| Sbjct 739000 TTCAATGTGATGGAATGCGTGTTGAGCCACGTAGGCAATTCGCAAGTTGGGATGTTTCCA 738941 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGT 319166 || | || || ||||| |||| ||||| || | ||| || ||||| Sbjct 738940 CACTGTGCCAATTTCCGCTTCAATTTCGCCCGTCAGTAACTTGATCAGGGT 738890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822454915820