Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq38 176 5e-39 >seq38 Length=1275103 Score = 176 bits (194), Expect = 5e-39 Identities = 742/1163 (64%), Gaps = 18/1163 (2%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || || || || || ||||| ||||||||||| || | |||||||| || || | Sbjct 988738 ATTTCGGTACACAGGTTACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGG 988797 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || ||||| ||||| || || || || | || ||||| | |||| ||| || || Sbjct 988798 TTGCAGGCATCTTTATACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATG 988857 Query 53879 GCTTTCCAGACGACACGAGCCTTTATTATAGATTTGT-ATCTCTT--TTCTCTTTCGTAT 53935 || | ||| | | ||||| || | || | | | | |||| |||||| Sbjct 988858 GCGTACCACAGCTTTTGGGCCTTGATCGT---TTGGCGAGCACGGCCTTCTTGTTCGTAG 988914 Query 53936 AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 53995 | | ||||| ||| || || || ||||| || | || || ||||| ||| | Sbjct 988915 CGGGCATACAGCTCTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTG 988974 Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 ||||| | || ||||||||| |||| | | ||| || ||||| ||||||||||| | | Sbjct 988975 GGACAGAACAGCGACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACC 989034 Query 54056 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114 || || || ||| || ||||| | || | ||| || || || ||||| ||| Sbjct 989035 CACAGCGC-ATAGAACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAG 989093 Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || | || | | | ||| | ||||| ||||||| ||| |||| | | | || || Sbjct 989094 GTCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGG 989153 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || ||||| || || ||||| | ||| | || ||||| || | |||| | ||| || Sbjct 989154 ACGCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGG 989213 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 | | ||| ||||| || ||||| || | || || ||| ||||||| || || Sbjct 989214 CAGGAGACCGTTGGAGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTT 989273 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 || ||||| || || || || | || |||||| || || || | || Sbjct 989274 GTGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGT 989333 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 || |||||||| || || || ||| ||||| | | || || || |||||||| Sbjct 989334 TTCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTG 989393 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 ||||| || || || || || | ||||| || || || || | || || Sbjct 989394 AGGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGA 989453 Query 54475 AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 54534 | | | ||| || || | ||| | || || || ||||| || || || || Sbjct 989454 CATCAATTGGTAGGTTTCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCAC 989513 Query 54535 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 |||||| | || ||| ||||| | ||| | | || || || || ||||| || || Sbjct 989514 ACGCATGATCAAGTGTTGAGGACGCTCAGCCACTTTCCCATTGATCTTGAGCAAATAAGA 989573 Query 54595 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 54654 ||||| |||||| || ||||| |||||||| ||| || || || || || || | Sbjct 989574 CCGTTCCAGAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCATAGATGATGGC 989633 Query 54655 TGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA----TACTTGAAATAA 54710 ||| ||||| ||| | ||| | || | | |||||| | || || | Sbjct 989634 TGAATTGAGACGATCGGCGTTCTTGATGACAA----CTTGGTAAGTGGTGTCCGAGATCA 989689 Query 54711 TCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCAC 54770 | || || ||||| || | || || |||| |||| || | || || | | |||| Sbjct 989690 TGGGCGAGTGTTTGCCCGTCTTGGGGTTGATATAGGTATACAAGTCTTCGACGACTTGCG 989749 Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830 || | ||||| ||||||||||| || || || | || || | || || | || | Sbjct 989750 AGAACACCTTTTTGGTTTCTTTGTGCAGGTTGGAGATAGCAATACGGGCAGCCAAGATAG 989809 Query 54831 CATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 |||| || ||||| ||| | || || || || |||| || | ||| |||||||| Sbjct 989810 CATAGTCAGGATG-GGTGGTGGTCATGTAAGCAGCCGTTTCAGCAGCAAGATTGTCCAAT 989868 Query 54890 TCTACCGTTGTTACTCCATTATA 54912 || || || || || || | ||| Sbjct 989869 TCCACAGTGGTCACACCTTGATA 989891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720753946720