Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq34 140 3e-28 seq21 122 9e-23 seq71 118 1e-21 seq27 89.7 5e-13 >seq34 Length=381833 Score = 140 bits (154), Expect = 3e-28 Identities = 301/447 (67%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 ||||| || ||||| | || |||||| || ||| | || |||| | || ||| || Sbjct 50137 AAGGCTGAATGGGCCTTCCGTTGGATCTCCAGCA---ACACCTCCTTTGCTGAACGCTTG 50081 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||||||| || || ||||| || | ||||| |||||| || ||| |||| || ||| Sbjct 50080 GTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTTGCCTCCATCTTCTGG 50021 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 | ||||| || ||| | ||||| || |||| ||| |||||| || || | | | ||| Sbjct 50020 TTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATTTGCCGCGAC 49961 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 || || || || ||||||||||||| ||||||||| || | ||| ||| ||| Sbjct 49960 GAAGGCCTCCACACCGACTTTGCCTGTCTGCTGTTCAGCCACATCCATAAGCAACCCAGC 49901 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 | | || ||| ||| ||| | ||| || ||| ||||| || ||| | ||| Sbjct 49900 TCCGAACGTATCACGGAAATCATTGTCGAAGCCGTCAAGATCGAACAAGAATTCTTAACC 49841 Query 117284 GAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342 || || |||| || || | || | || | ||| | ||||| |||||||| || Sbjct 49840 GATGCCTTGCCTGTCGCCT-TGATTGGCATGAATGCCACGTTGATGTGCCAATACATTGA 49782 Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAA 117402 ||||| || ||| | |||||| ||| ||| | | ||| ||||| | ||| Sbjct 49781 ATTCGTTGCTGACCGTCTGCTGGTCGCCTTGGGCCAAGAAAAGGTGTACAAATCCATCAA 49722 Query 117403 CCCGCTGGACTTTATGAACCTCATCTC 117429 ||| | ||||||||| || | || || Sbjct 49721 CCCCTTTGACTTTATGGACATGATTTC 49695 >seq21 Length=571097 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || || || |||| || ||| || | Sbjct 540097 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 540038 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| |||| |||||||| |||||||| | ||||| Sbjct 540037 GACTCAATTGACAACG-TCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCA 539979 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 539978 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539919 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| || || | || || || || ||| Sbjct 539918 CATCCAAAAAGAATCTACTCTCCACCTTGTG 539888 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || || || |||| || ||| || | Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | |||||||| |||||||| | ||||| Sbjct 539581 GACTCAATTGACAACG-TCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCA 539523 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 539522 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539463 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || |||| |||| Sbjct 539462 CATCCAGAAAGAATCCACCTTGCA 539439 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || || || |||| || ||| || | Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | |||||||| |||||||| | ||||| Sbjct 539809 GACTCTATTGATAACG-TCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCA 539751 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 539750 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539691 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| || || | || || || || ||| Sbjct 539690 CATCCAAAAAGAATCTACTCTCCACCTTGTG 539660 >seq71 Length=978913 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||||||| | || |||||| || | Sbjct 432607 ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCG 432666 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| |||| || ||||| || ||||| | ||||| Sbjct 432667 GACTCTATTGATAACG-TCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCA 432725 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || ||||| || || || || | || || ||| |||||||| Sbjct 432726 ACAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAA 432785 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| |||| |||| Sbjct 432786 CATCCAAAAGGAATCCACCTTGCA 432809 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || | || ||||| ||||| || |||| || ||| || | Sbjct 432835 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 432894 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || || |||||| | ||||| Sbjct 432895 GACTCTATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCA 432953 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 432954 ACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 433013 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| |||| |||| Sbjct 433014 CATCCAAAAGGAATCCACCTTGCA 433037 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || | || ||||| ||||| || |||| || ||| || | Sbjct 433063 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 433122 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || || |||||| | ||||| Sbjct 433123 GACTCTATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCA 433181 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 433182 ACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 433241 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| ||||| | || || || || ||| Sbjct 433242 CATCCAAAAGGAATCTACTCTCCACCTTGTG 433272 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || || || |||| |||||| || | Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || || |||||| | ||||| Sbjct 433351 GACTCTATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCA 433409 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || ||||| || || || || | || || ||| |||||||| Sbjct 433410 ACAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAA 433469 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||| |||| |||| Sbjct 433470 CATCCAAAAGGAATCCACCTTGCA 433493 >seq27 Length=1513655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| |||| |||| |||||||| || || || | ||||| ||||| || |||| | Sbjct 550245 TCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTCTGATCTTTG 550304 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || || |||| |||| |||||| | ||||||||||||||| ||||| ||| Sbjct 550305 CTGGTAAGCAATTGGAAGACGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCA 550364 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | |||| | ||| |||| Sbjct 550365 CCTTGCACTTGGTGCTGCG 550383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218465812640