Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq23 95.1 8e-15 >seq23 Length=533417 Score = 95.1 bits (104), Expect = 8e-15 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCC 97376 ||| || ||||| || | ||||| | ||| || || | | ||| |||| ||||| || Sbjct 274181 ATCCGTGGGGTTGGTTTTGATGGTGTGAATGATTTGTTGCAGTTGGTCAATGCCTTTGCC 274240 Query 97377 ACCATAAT-TGT---GCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATC 97432 | ||||| ||| || ||| ||| || || |||||||| | ||||||||| | Sbjct 274241 GCTATAATCTGTATCGCAGTCGAC----ATAGTCAGCCCCAAAATGGCGCCATTGGAAGC 274296 Query 97433 CATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGG 97492 |||| ||||| ||||| || || | || | || | || || | ||| || | || Sbjct 274297 CATAGACAGGACCAAGATCGCCCTGTTTGCGATGGGACAAGCCGATCTTGTCCAGGTACT 274356 Query 97493 ACCTAGATCCATTTGCATCCCAAATGTGCACACCA-GATGCTGCAAGCTCTTTGCTGTCA 97551 ||| || ||||| | |||||||| | | ||| ||| | | || | ||||||| Sbjct 274357 CCCTGGAGCCATTGCCTTCCCAAATCTTGATACCTCGAT-CGGTTAGGTGGTTGCTGTTT 274415 Query 97552 GTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTA 97611 || | | | ||||||||||| ||||||||||| ||| ||| |||| |||| ||| Sbjct 274416 GTGTCTGCCCGGATAAACCACAGCAATTCTTCCAGAACCGCTCGGTAAAACACTCGCTTG 274475 Query 97612 GTTGT 97616 || || Sbjct 274476 GTGGT 274480 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 96965 TAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGGAG 97024 |||| || ||||| || || || | |||||| | || || || ||||||| || Sbjct 273766 TAAAGTCGTCAATGGAGCTGATTTTGCGGGCAAAGGTCAGGGTGGGAAAAGGCCGAGGTT 273825 Query 97025 TTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTA 97084 ||| || |||| | | ||||| || | || | ||||| | ||| | || || | Sbjct 273826 CACGCTGCAGTTGCTGTTTCAGAGCGTCCAAATGGTCAACATATACGTGGGTGTCCCCCA 273885 Query 97085 AAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATA 97144 || || || ||||| ||||| | || || ||||||||||| ||||| | || | || Sbjct 273886 TGGTATGGATGAATTCGCCAGGCTCCAAGTCGGTGACATGGGCAATCATGCGGGTGAGTA 273945 Query 97145 GAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATA 97202 | ||| ||||| ||||| ||||| || || ||||| ||| ||||| ||| || Sbjct 273946 ATGCATACGATGCAATATTAAAGGGCACGCCCAGACCCATGTCACATGATCGTTGGTA 274003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783518186980