Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq71 98.7 8e-16 seq27 98.7 8e-16 >seq71 Length=978913 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | || ||||| ||||| ||||||||||| | | || | |||| Sbjct 432818 AGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 432759 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| ||||| ||| ||||||| | |||||| || || | ||||| ||||| Sbjct 432758 TCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCT 432699 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||||||||| | ||| || ||| || ||| ||| | ||||||| | Sbjct 432698 TGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATGGTC 432639 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || || ||||||||||| Sbjct 432638 TTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | || ||||| ||||| ||||||||||| | | || | |||| Sbjct 433046 AGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 432987 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| ||||||| | |||||| || ||| | |||||||| || Sbjct 432986 TCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 432927 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||||||||| | ||| || ||| || || ||| | || ||| | Sbjct 432926 TGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTC 432867 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || |||||||| |||||||| Sbjct 432866 TTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || ||||| ||||| ||||||||||| | | || | |||| Sbjct 433274 AGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 433215 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| ||||||| | |||||| || ||| | |||||||| || Sbjct 433214 TCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 433155 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||||||||| | ||| || ||| || || ||| | || ||| | Sbjct 433154 TGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTC 433095 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || |||||||| |||||||| Sbjct 433094 TTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 18093 TGTTAT---CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||||| || || || || | || |||| ||| | || ||||| ||||| |||||| Sbjct 433526 TGTTATTGACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTG 433467 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 ||||| | | || | |||||| | ||| ||||| ||| ||||||| | |||||| Sbjct 433466 TAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGG 433407 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 || ||| | |||||||| || || | ||||||||| | ||| || ||| | Sbjct 433406 TCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAG 433347 Query 18270 GGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| ||| | || || | ||||| ||||| || || ||||| |||||||| Sbjct 433346 GATTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 >seq27 Length=1513655 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || ||||||||||||||||||||||| | Sbjct 1427426 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAT 1427485 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||| ||| ||||| ||| | || | | ||||||||| || Sbjct 1427486 AGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGA 1427545 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | |||||||| || ||| | || || |||| | Sbjct 1427546 ATGCCTTCCTTGTCTTGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACT 1427605 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||| || ||||| ||||| ||||| |||||||| Sbjct 1427606 TCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343472948930