Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq38 185 1e-41 seq34 86.0 8e-12 >seq38 Length=1275103 Score = 185 bits (204), Expect = 1e-41 Identities = 744/1163 (64%), Gaps = 18/1163 (2%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || || || || || ||||| |||||||| || || | |||||||| || || | Sbjct 988738 ATTTCGGTACACAGGTTACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGG 988797 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || ||||| ||||| || || || || | || ||||| | || | ||| || || Sbjct 988798 TTGCAGGCATCTTTATACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATG 988857 Query 63117 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTC--CTTTCTCTTTCGTAT 63173 || | ||| | | | ||||| || | || | | | | | |||| |||||| Sbjct 988858 GCGTACCACAGCTTTTGGGCCTTGATCGT---TTGGCGAGCACGGCCTTCTTGTTCGTAG 988914 Query 63174 AGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCC 63233 | | ||||| |||||| || || ||||| || | || || | ||| ||| | Sbjct 988915 CGGGCATACAGCTCTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTG 988974 Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 ||||| | || ||||||||| |||| | | ||| || ||||| ||||||||||| | | Sbjct 988975 GGACAGAACAGCGACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACC 989034 Query 63294 CAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 || || || ||| || ||||| | | | ||| || || || ||||| ||| Sbjct 989035 CACAGCGC-ATAGAACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAG 989093 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || | || | | | ||| | ||||| ||||||| ||| ||||| | | | || || Sbjct 989094 GTCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGG 989153 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || ||||| || || ||||| | ||| | || ||||| || | |||| | ||| || Sbjct 989154 ACGCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGG 989213 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 | | |||||| || || ||||| || | || || ||| ||||||| || || Sbjct 989214 CAGGAGACCGTTGGAGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTT 989273 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || ||||| || || || || | || |||||| || || || | || Sbjct 989274 GTGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGT 989333 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 || ||||||||||| || || || ||||| | | || || || |||||||| Sbjct 989334 TTCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTG 989393 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 |||||| || || || || || | ||||| || || || || | || || Sbjct 989394 AGGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGA 989453 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | | | ||| || || | ||| | || || || ||||| || || || || Sbjct 989454 CATCAATTGGTAGGTTTCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCAC 989513 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | || ||| ||||| | ||| | | ||| || || || | ||| || || Sbjct 989514 ACGCATGATCAAGTGTTGAGGACGCTCAGCCACTTTCCCATTGATCTTGAGCAAATAAGA 989573 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 ||||| |||||| || ||||| |||||||| ||| || || || || || || | Sbjct 989574 CCGTTCCAGAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCATAGATGATGGC 989633 Query 63893 CGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA----TACTTGAAATAA 63948 |||||||| ||| | ||| | || | | |||||| | || || | Sbjct 989634 TGAATTGAGACGATCGGCGTTCTTGATGACAA----CTTGGTAAGTGGTGTCCGAGATCA 989689 Query 63949 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 64008 | || || ||||| || | || || || | |||| | | || || || | |||| Sbjct 989690 TGGGCGAGTGTTTGCCCGTCTTGGGGTTGATATAGGTATACAAGTCTTCGACGACTTGCG 989749 Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 || | ||||| ||||| ||||| || || || || || || | ||| || | || | Sbjct 989750 AGAACACCTTTTTGGTTTCTTTGTGCAGGTTGGAGATAGCAATACGGGCAGCCAAGATAG 989809 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 |||| || ||||| ||| | || || || || |||| || || ||| |||||||| Sbjct 989810 CATAGTCAGGATG-GGTGGTGGTCATGTAAGCAGCCGTTTCAGCAGCAAGATTGTCCAAT 989868 Query 64128 TCTACCGTTGTTACTCCATTATA 64150 || || || || || || | ||| Sbjct 989869 TCCACAGTGGTCACACCTTGATA 989891 >seq34 Length=381833 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| || || ||| ||| || || ||||| | | ||| | |||||| || Sbjct 49926 AACAGCAGACAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAG 49985 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | || ||||| | ||| ||||| || | ||| || ||||| || || | || Sbjct 49986 AAGGTCAAACCAGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCC 50045 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 || ||||| || ||||| || ||||||||||| Sbjct 50046 GAGAAGAAAATACCTTCGACAGCAGCAAAGGC 50077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816702509920