Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 seq25 91.5 1e-13 seq27 89.7 5e-13 seq38 82.4 8e-11 >seq21 Length=571097 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| |||||||| ||||| || || | |||| ||||||||||| || ||| Sbjct 539901 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539960 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| || || ||||| |||||||||||||| || ||||| || Sbjct 539961 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTG 540020 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || ||| | || || || || | || | |||||||| |||| || Sbjct 540021 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 540080 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 540081 TTGACGAAGATTTGCAT 540097 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || ||||| | || || ||||| || ||||| || || Sbjct 539412 TGGCCACCACGGAGGCGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCA 539471 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||||||||||| || |||||| |||| |||||||| || || ||| Sbjct 539472 GAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGA 539531 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||||||||| ||| ||||| || | | || | || ||| | || || Sbjct 539532 GGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCA 539591 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | |||||||| |||| || || || || ||||||||| Sbjct 539592 ACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 539642 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| |||||||| ||||| || || | |||| ||||||||||| || ||| Sbjct 539673 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539732 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| || || ||||| |||||||||||||| ||| ||||| || Sbjct 539733 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539792 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||| | || || || || | || | |||||||| |||| || Sbjct 539793 ACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539852 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 539853 TTGACAAAGATTTGCATA 539870 >seq25 Length=485700 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 152763 TAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTA 152822 ||||||||||| ||||||||||| || |||| |||| | ||||| || | || ||| Sbjct 239069 TAGTACATGCCGGTCTTGAGGCCCTTTTTCCAGGCGTAAAAGTGCATGGAGGTCAGCTT- 239011 Query 152823 GCCAAAG-TAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCC 152881 ||||||| |||| ||| | || ||| ||| | ||||| ||||| ||||| || || Sbjct 239010 GCCAAAGGTAGGCTCGCCAGTGAACAAGTTCATGGATTGGGACTGATCGATAAAAGCACC 238951 Query 152882 TCTATCTGCTGCCATGTCGATCAT 152905 | ||| || ||||||||||| || Sbjct 238950 ACGATCGGCAGCCATGTCGATGAT 238927 >seq27 Length=1513655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || || || ||||| ||||| || ||| | Sbjct 550395 CCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 550336 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || ||||||||| ||||||||||||| || || ||||| Sbjct 550335 AAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGA 550276 Query 139658 ATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 550275 ATACCTTCTTTGTC 550262 >seq38 Length=1275103 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 152716 GAGCGACGGTAAA-TTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCC 152774 || ||||||| || ||| ||| | | | | || ||| | |||| | |||||| || ||| Sbjct 900021 GATCGACGGTGAACTTGATGGCA-TCGACGGCAGGACGGGTACTCAGATAGTAGATACCC 899963 Query 152775 GTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGT-AGG 152833 ||||| || || | ||| ||||| | ||||| || | || ||| |||||||| ||| Sbjct 899962 GTCTTCAGACCCTTCTTCCAACCGTAAAAGTGCATGGAGGTCAGCTT-GCCAAAGTTAGG 899904 Query 152834 GTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGC 152893 || | ||| ||||||| | ||| |||||| ||||| || || | || || || Sbjct 899903 CACGCCGATGAACACGTTGAGACTTTGGGATTGATCGATAAAGGCACCACGGTCGGCAGC 899844 Query 152894 CATGTCGATCATG 152906 ||||||||| ||| Sbjct 899843 CATGTCGATGATG 899831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063293108800