Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 188 1e-42 seq34 95.1 2e-14 >seq38 Length=1275103 Score = 188 bits (208), Expect = 1e-42 Identities = 743/1158 (64%), Gaps = 8/1158 (1%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||| || || |||||||| ||||| ||||| || | |||||||| || || | Sbjct 988738 ATTTCGGTACACAGGTTACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGG 988797 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || ||||| ||||| || || || || | || ||||| | || | ||| || || Sbjct 988798 TTGCAGGCATCTTTATACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATG 988857 Query 79789 GCTTTCCAGACGACTCGAGCCTTTATTATA-GACTTGTATCTCTTTTCTCTTTCGTATTG 79847 || | ||| | | | ||||| || | | | | | | || || |||||| | Sbjct 988858 GCGTACCACAGCTTTTGGGCCTTGATCGTTTGGCGAGCACGGCCTT-CTTGTTCGTAGCG 988916 Query 79848 TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGG 79907 | ||| | |||||| || || ||||| || |||| | ||||| ||||| || Sbjct 988917 GGCATACAGCTCTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTGGG 988976 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967 ||| | || ||||||||| || | | | || || ||||| ||||||||||| | ||| Sbjct 988977 ACAGAACAGCGACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCA 989036 Query 79968 AAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 80026 || || ||| || ||||| | || | || || || || ||||| ||| | Sbjct 989037 CAGCGC-ATAGAACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGT 989095 Query 80027 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 | | || | | | ||| | ||||| ||||||| ||| ||||| | | | || || | Sbjct 989096 CCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGAC 989155 Query 80087 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 80146 | ||||| || || ||||| | ||| | || ||||| || | |||| | ||| || | Sbjct 989156 GCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCA 989215 Query 80147 TAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 80205 | ||| ||||| ||| || ||||| || | || || ||| ||||||| || || Sbjct 989216 GGAGACCGTTGGA-GTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTG 989274 Query 80206 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 80265 || ||||| || || || || | || |||||| || || || | || Sbjct 989275 TGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTT 989334 Query 80266 TCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGG 80325 || |||||||| || || || || ||||| | | || || || |||||||| Sbjct 989335 TCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGA 989394 Query 80326 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385 ||||| || || || || || | ||||| || || || || | || ||| Sbjct 989395 GGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGAC 989454 Query 80386 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACA 80445 | | | ||| || || | ||| | || || || ||||| || || || ||| Sbjct 989455 ATCAATTGGTAGGTTTCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCACA 989514 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505 ||||| | || ||| ||||| | ||| | | || ||| || || | ||| ||||| Sbjct 989515 CGCATGATCAAGTGTTGAGGACGCTCAGCCACTTTCCCATTGATCTTGAGCAAATAAGAC 989574 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 80565 ||||| |||||| || ||||| |||||||| ||| || || || || || || | Sbjct 989575 CGTTCCAGAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCATAGATGATGGCT 989634 Query 80566 GAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGA 80625 || ||||| ||| | ||| | || || | ||| | || || || || Sbjct 989635 GAATTGAGACGATCGGCGTTCTTGATGACAACTTGGTAAGTGGTGTCCGAGATCATGGGC 989694 Query 80626 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 80685 || ||||| || | || || || | |||| | | || || || | |||| || Sbjct 989695 GAGTGTTTGCCCGTCTTGGGGTTGATATAGGTATACAAGTCTTCGACGACTTGCGAGAAC 989754 Query 80686 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAA 80745 | ||||| ||||| ||||| || || || | || || | ||| || || || ||||| Sbjct 989755 ACCTTTTTGGTTTCTTTGTGCAGGTTGGAGATAGCAATACGGGCAGCCAAGATAGCATAG 989814 Query 80746 TCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTAC 80804 || ||||| ||| | || || || || |||| || || ||| |||||||||| || Sbjct 989815 TCAGGATG-GGTGGTGGTCATGTAAGCAGCCGTTTCAGCAGCAAGATTGTCCAATTCCAC 989873 Query 80805 CGTTGTTACTCCATTATA 80822 || || || || | ||| Sbjct 989874 AGTGGTCACACCTTGATA 989891 >seq34 Length=381833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || ||| || || ||| ||| || || ||||| | | ||| ||||||||||| Sbjct 49926 AACAGCAGACAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAG 49985 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||| | ||| ||||| || | ||| || ||||| ||||| | || Sbjct 49986 AAGGTCAAACCAGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCC 50045 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 || ||||| || ||||| || || |||||||| || Sbjct 50046 GAGAAGAAAATACCTTCGACAGCAGCAAAGGCCAC 50080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267776466960