Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq38 136 6e-27 seq34 129 9e-25 seq25 95.1 2e-14 >seq38 Length=1275103 Score = 136 bits (150), Expect = 6e-27 Identities = 344/518 (66%), Gaps = 4/518 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || |||||| || ||| || || |||| |||||| || | | ||| || || | || Sbjct 989240 ACCAACGGCTACTCCAACGGTCTCCTGCCCATGCTCCGAGTCTTCAACAACACTGCC-CG 989182 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| || || ||||| || || || || ||| | ||| | ||| |||||||||| Sbjct 989181 CTACGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATGTACCTGGAACCTTG 989122 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || || |||| | || | ||||| ||| ||| || || || Sbjct 989121 GCACGCCGATGTCTTCACCTTTTTGGACCTTCGCAAGAACGTCGGCAAGGACGAAATCCG 989062 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | || |||| ||||| || |||||||| ||| | ||||||||||| || | | Sbjct 989061 TGCCCGTGATCTGTTCTATGCGCTGTGGGTGCCTGATCTCTTCATGAAGCGTGTGGAAGC 989002 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 | ||| | ||| || | || ||| || | || |||||| ||| ||||| Sbjct 989001 CAACGGCGAGTGGTCGCTGTTCTGTCCCAACGAAGCCCCTGGTCTGCACGAAGTATGGGG 988942 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 ||| || || || | ||| | |||||| ||||| ||||| || | |||| Sbjct 988941 CGATGAATTCGAAGAGCTGTATGCCCGCTACGAACAAGAAGGCCGTGCTCGCCAAACGA- 988883 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 || | || | | | |||||| | |||||| || || || || || || | || | Sbjct 988882 TCAAGGCCCAAAAGCTGTGGTACGCCATCATGGAAGCCCAAACCGAAACCGGCAACCCCT 988823 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 || || || || ||| || || ||||| |||||||| || | |||||||||| Sbjct 988822 TTATGCTGTATAAAGATGCCTGCAACCGCAAATCCAACCAACAAAACCTCGGCACCATCA 988763 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || || || ||||| || |||||||| |||||| || Sbjct 988762 AGTGCAGTAACCTGTGTACCGAAATTGTCGAGTACTCC 988725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 97977 ATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGA 98036 ||||||| | |||| || || | || |||| ||| |||||| || | | | || Sbjct 988058 ATCATGTCCGACAACGGCTCTGTCCAGCACATCCCCAACATCCCCGATAACCT-CAAAGC 988000 Query 98037 -ATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACA 98094 ||||||||||| || ||||| || ||| | | || || |||||||||||||||||| Sbjct 987999 CATCTACAAGACCGTGTGGGAAATCTCCCAACGC-ACCCTCATCGATATGGCTGCCGACC 987941 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 | |||| || || || || ||| |||| ||| | ||| || ||| | || Sbjct 987940 GTGGTGCCTTTATCGATCAATCCCAAAGTCTCAACGTGTTCATTGGCGTGCCTAACTTTG 987881 Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | |||| || || |||||||||| ||||| ||||| || |||||||| ||||||| Sbjct 987880 GCAAGCTGACCTCCATGCACTTTTACGGCTGGAAGAAGGGTCTGAAGACGGGTATGTACT 987821 Query 98215 ATCTG 98219 ||||| Sbjct 987820 ATCTG 987816 >seq34 Length=381833 Score = 129 bits (142), Expect = 9e-25 Identities = 330/494 (67%), Gaps = 20/494 (4%) Strand=Plus/Minus Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425 |||||||||| |||||| | || |||||| | ||| | || | || || | Sbjct 50141 TAAAAAGGCTGAATGGGCCTTCCGTTGGATCTCCAGCAACA---CCTCCTTTGCTGAACG 50085 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 ||||||| || || || || || || || ||||| ||||| ||||| ||||||| Sbjct 50084 CTTGGTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTTGCCTCCATCTT 50025 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||| | |||||||| || | ||||| || |||| | ||||| | || | || Sbjct 50024 CTGGTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATTTGCCG 49965 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA 125605 ||||| ||||| ||| ||||||||| ||| ||||| || || ||| | | | Sbjct 49964 CGACGAAGGCCTCCACACCGACTTTGCCTGTCTGCTGTTCAGCCAC-ATC--CATAAGCA 49908 Query 125606 GTGCAGATCC-AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 ||| ||| | || | | || |||| |||| ||| ||||| | ||| |||| Sbjct 49907 ACCCAGCTCCGAACG-TATCACGGAAATCA---TTGT---CGAAGCCGTCAAGATCGAAC 49855 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 |||| || ||||||| || | || ||| | ||||||||||||| || | | |||| Sbjct 49854 AAGAATTCTTAACCGATGCCTTGCCTGTCGCCTTGATTGGCATGAATGCCACGTTGATGT 49795 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC---GCAAGA 125781 || | ||||| || || || || || ||||| ||| || ||| |||| ||| Sbjct 49794 GCCAATACATTGAATTCGTTGCTGACCGTCTGCTGGTCGCCTTG---GGCCAAGAAAAGG 49738 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 | ||||| ||| || |||||||| || ||| || || || || | || ||||||| Sbjct 49737 TGTACAAATCCATCAACCCCTTTGACTTTATGGACATGATTTCTCTCCAAGGCAAGACCA 49678 Query 125842 ACTTTTTCGAGAAG 125855 |||| || || ||| Sbjct 49677 ACTTCTTTGAAAAG 49664 Score = 104 bits (114), Expect = 3e-17 Identities = 192/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || | ||||||||||| |||||||||| ||||| | ||||| | ||||| Sbjct 50539 ATTTGGCAATTCTACAAAAAGGCCGAGGCCTCCTTCTGGACTGCTGAAGAAATTGATCTC 50480 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||||||| | |||| | ||| || | ||||| ||| Sbjct 50479 TCCAAGGATCTTGGTGATTGGGAAAACAAGATGACCAAGGATGAACGGTACTTTATCTCG 50420 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || || | |||||||||||| |||| || || || ||||| || || || || || | Sbjct 50419 CATATCCTTGCCTTCTTTGCCAGCTCGGACGGTATTGTCAATGAAAACTTGGTG-CAAAA 50361 Query 125199 TTCTCT-CAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 | | | | || | | ||| | || | ||| || || || |||||||||||||| Sbjct 50360 CTTTATGGACGAAGTCAAGATTGCCGAAGCCAAGTGTTTCTATGGTTTCCAAATCATGAT 50301 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| || | ||| | |||| ||| | |||||||| Sbjct 50300 TGAAAATATCCACGCCGAAACTTACAGTCTGCTGATTGA 50262 >seq25 Length=485700 Score = 95.1 bits (104), Expect = 2e-14 Identities = 185/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | ||| ||| | ||||| ||||| | ||||||| | | | | || Sbjct 237488 ACCAACGGCACCTCCAACGGCATTGTGCCCATGCTGCGTGTGTACAACGACACGGCTCGC 237547 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGC-GCTATAGCCGTCTACTTGGAACCTTG 96925 | || || ||||| ||| |||||| ||| ||| | ||| | ||||||||||| || Sbjct 237548 TTTGTGACCCAGGGTGGCGGTAAACGCAACGGCAGCTTT-GCCATGTACTTGGAACCCTG 237606 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| | ||| || |||||||| | || ||||||| ||||| ||| ||||| || Sbjct 237607 GCATGTGGATGTGTTTGACTTCTTGGACCTGCGCAAGAACTCGGGCAAGGAAGAACTGCG 237666 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| |||| | |||||| | || || |||||||||| || ||| | | Sbjct 237667 TGCACGTGACCTGTTCCTGGGGCTCTGGATCCCTGACCTGTTCATGAAACGTGTCGAAGC 237726 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGAC 97076 | |||| |||| || | |||||| || Sbjct 237727 CAATGGCACCTGGTCTCTCTTCTGCCCCAAC 237757 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||| || || | | | | | ||||| ||||||||||| | || Sbjct 238894 TACAAGACCGTGTGGGAAATCTCTCAACGGGT-GATCATCGACATGGCTGCCGATCGTGG 238952 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || | || || ||| ||||| | || ||| | || |||||| |||| | Sbjct 238953 TGCTTTTATCGATCAGTCCCAATCCATGAACTTGTTCACTGGCGAGCCTACCTTTGGCAA 239012 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 |||| || || ||||||||||| ||||| |||||||||||||| ||||||||||| || Sbjct 239013 GCTGACCTCCATGCACTTTTACGCCTGGAAAAAGGGCCTCAAGACCGGCATGTACTACCT 239072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058143990640