Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 7e-16 seq77 82.4 6e-11 seq71 82.4 6e-11 >seq27 Length=1513655 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| |||||||| || ||| | | | || || | ||| Sbjct 1427449 ATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCCAGTTG 1427508 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| || | |||||||||||||| || ||||| ||||| ||||| ||| || Sbjct 1427509 CTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTT 1427568 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| || |||| ||| || || || || ||||| ||||| || || Sbjct 1427569 CTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGT 1427628 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || |||||| ||||| |||||||| Sbjct 1427629 CAAAGTTTTGACAAAGATTTGCAT 1427652 >seq77 Length=46662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | |||||| || ||||| |||||||||||| ||| | | | ||||| Sbjct 33838 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCTTCC 33779 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| ||||| ||||| ||||| ||||||||||| | Sbjct 33778 AATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTTGA 33719 Query 15275 ATTTTGCTCTTTACAATTTCTATGG 15299 || || ||| ||| | || |||| Sbjct 33718 ATCTTTTGCTTGACATTGTCAATGG 33694 >seq71 Length=978913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || | |||||| || ||||| |||||||| || ||| | | | ||||| Sbjct 432816 AACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTC 432757 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | || | |||||||||||| || || |||||||| || Sbjct 432756 AAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCTTG 432697 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| || | || || | || ||| || || ||||| ||||| || Sbjct 432696 AATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATGGTCTT 432637 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||||||||| Sbjct 432636 GCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178696797274