Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq71 95.1 8e-15 seq21 87.8 1e-12 seq27 86.0 4e-12 >seq71 Length=978913 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-G 33213 |||| ||||| ||||| || || || ||||| || ||||| ||||| | |||| | Sbjct 432821 CGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGA----GAGTACG 432766 Query 33214 GTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | |||| ||| |||||| || ||| || | |||||| ||||| | || || ||||| Sbjct 432765 GCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTC 432706 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || |||| || || || | | ||| | ||| || || || |||| || Sbjct 432705 TTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGT 432646 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGTTAATGTT 33385 || || || || |||||||| || ||||||||||||||| | || | |||||| Sbjct 432645 GATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGAT--TGTTAAATGTT 432593 >seq21 Length=571097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| || ||||| ||||| | | || | || || | ||||| ||| Sbjct 539901 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539960 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || | |||||| ||||| | || ||||||||||| || |||| || || Sbjct 539961 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTG 540020 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||| | ||| || || ||| || ||||| || || || || || || || Sbjct 540021 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 540080 Query 33353 TTTACGAAAATTTGCATG 33370 || ||||| ||||||||| Sbjct 540081 TTGACGAAGATTTGCATG 540098 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| || || ||||| || || ||||| ||||| | | || | || || Sbjct 539433 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCG 539492 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||||| ||| ||| || | |||||| ||||| | || ||||||||||| || Sbjct 539493 AGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 539552 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| || || || | | ||| | ||| || || ||| || ||||| || || || Sbjct 539553 ATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTG 539612 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || |||||||| Sbjct 539613 CCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 >seq27 Length=1513655 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||| ||||| || || || ||||| || ||||| || ||||| || | | Sbjct 550383 CGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCG 550324 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| ||| || | |||||| ||||| | || || |||||||| Sbjct 550323 TCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACCTTCTTTG 550264 Query 33275 TC 33276 || Sbjct 550263 TC 550262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777157098372