Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq27 91.5 1e-13 seq77 84.2 2e-11 seq71 82.4 5e-11 >seq27 Length=1513655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||||||||||| || || || || ||| |||| |||| ||| Sbjct 1427449 ATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCCAGTTG 1427508 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 || || ||||| ||||| ||||| || || |||| | ||||| || ||| ||| || Sbjct 1427509 CTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTT 1427568 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || ||||| ||| | ||| | | ||| || || | ||||| ||||| || || Sbjct 1427569 CTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGT 1427628 Query 44098 TAAAGTCTTCACAAATATTTGCATG 44122 ||||| || ||||| ||||||||| Sbjct 1427629 CAAAGTTTTGACAAAGATTTGCATG 1427653 >seq77 Length=46662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || | ||| || ||||| || || |||||| | ||| |||| ||| Sbjct 33838 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCTTCC 33779 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||| || || ||||| ||||| ||||||||||| |||| | ||||||||| ||| | Sbjct 33778 AATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTTGA 33719 Query 44033 ATTTTTTGTTTGAC 44046 || ||||| ||||| Sbjct 33718 ATCTTTTGCTTGAC 33705 >seq71 Length=978913 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| || || ||||| || | ||||| ||||| |||| | |||||||| Sbjct 432763 CATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTT 432704 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| ||||| ||||| || ||| || || | | || || || | || | Sbjct 432703 TATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGA 432644 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || || || | |||||| || || ||||||||| Sbjct 432643 TGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 432606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777107080872