Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq27 91.5 1e-13 seq71 84.2 2e-11 seq21 82.4 6e-11 >seq27 Length=1513655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAAT 20062 ||| || || ||||||||||| |||||||| || |||| | | ||| |||| | Sbjct 1427449 ATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTG--ATAGGGTACGGCCATCCTCCAGT 1427506 Query 20063 TGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATT 20122 || ||||| ||| |||| | | |||||||| || | |||||| ||||| ||| Sbjct 1427507 TGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATC 1427566 Query 20123 TTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT-TTCCACGGTAATGGTTTTGCC 20181 || || || || || ||| | ||| | ||| || ||||| ||||| ||||| || Sbjct 1427567 TTCTGCTTGACATGCTCAATGGCATC-CGAGGACTCGACTTCCAATGTAATAGTTTTTCC 1427625 Query 20182 GGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||||||||| |||||||| Sbjct 1427626 AGTCAAAGTTTTGACAAAGATTTGCAT 1427652 >seq71 Length=978913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || | || ||||| ||||| |||||||| || | ||| |||||| Sbjct 432815 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCA 432756 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| ||||| ||| | ||||| | ||||| || || | |||||||| || | Sbjct 432755 AGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCTTGA 432696 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT-TTCCACGGTAATGGTTTT 20178 || ||||| || || | ||| ||| || | ||| | || ||||| ||| ||||| || Sbjct 432695 ATCTTTTGCTTGACGTTATCAATAGAGTC-CGAGGATTCGACTTCCAAGGTGATGGTCTT 432637 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | || ||||| ||||||||||| Sbjct 432636 GCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 >seq21 Length=571097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || |||||||||||||| |||||||| || | ||| |||||| | || Sbjct 539667 TGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGC 539726 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || || | ||||| || || | |||||||||||| || ||| Sbjct 539727 TTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTT 539786 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGG-TTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || || | ||| ||| || | ||| ||| ||| | ||||| || ||||| || Sbjct 539787 TGCTTGACGTTATCAATAGAGTC-CGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGT 539845 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || || |||||||| |||||||| Sbjct 539846 CAGGGTCTTGACAAAGATTTGCAT 539869 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || |||||||||||||| |||||||| || | ||| |||||| | || Sbjct 539895 TGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGC 539954 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || || | ||||| || || | |||||||||||| ||| ||| Sbjct 539955 TTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTT 540014 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGG-TTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || || | | ||| || || | ||| ||| ||| | ||||| || ||||| || Sbjct 540015 TGCTTGACGTTGTCAATTGAGTC-CGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGT 540073 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || |||||||| Sbjct 540074 CAGGGTCTTGACGAAGATTTGCAT 540097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586617036034