Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq27 131 4e-25 seq21 131 4e-25 seq71 118 2e-21 seq34 114 3e-20 seq77 89.7 1e-12 >seq27 Length=1513655 Score = 131 bits (144), Expect = 4e-25 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || |||||||| ||||| || ||||| ||||| || | || || Sbjct 1427440 AAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATC 1427499 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || || |||||||| | | |||||||||||||| || ||||| || || Sbjct 1427500 CTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTC 1427559 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATA 104524 |||||||| ||| || |||| || | || ||| | ||| || || || | ||||||| Sbjct 1427560 TTGAATCTTCTGC-TTGACATGCTCAATGGCATC-CGAGGACTCGACTTCCAATGTAATA 1427617 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| | ||||| ||||| || ||||| Sbjct 1427618 GTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 >seq21 Length=571097 Score = 131 bits (144), Expect = 4e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || |||||||| ||||| | || ||||| || || Sbjct 539439 TGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGC 539498 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||||| |||||||| || |||||||| || || |||||| Sbjct 539499 TTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTT 539558 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || | | || | ||| ||| || || || ||||||||||| ||||| Sbjct 539559 TGCTTGACGTTGTCAATTGAGTC-CGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGT 539617 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || ||||| Sbjct 539618 CAGGGTCTTGACAAAGATTTGCAT 539641 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || |||||||| ||||| | || ||||| || || || ||| Sbjct 539673 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539732 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| |||||||| || |||||||| || || |||||| || Sbjct 539733 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539792 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || | ||| ||| || || || ||||||||||| ||||| || || Sbjct 539793 ACGTTATCAATAGAGTC-CGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGT 539851 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 539852 CTTGACAAAGATTTGCAT 539869 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || |||||||| ||||| | || ||||| || || || ||| Sbjct 539901 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539960 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| |||||||| || |||||||| || ||||||||| || Sbjct 539961 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTG 540020 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || | ||| ||| || || || ||||||||||| ||||| || || Sbjct 540021 ACGTTGTCAATTGAGTC-CGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGT 540079 Query 104542 TTTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 540080 CTTGACGAAGATTTGCAT 540097 >seq71 Length=978913 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || || || || |||||||| ||||| | || ||||| ||||| Sbjct 432809 TGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGC 432750 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || || | ||||| |||||||| || ||||||||||| ||||||||| Sbjct 432749 TTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCTTGAATCTTT 432690 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || | | || | ||| ||| || || | || || ||||| ||||| Sbjct 432689 TGCTTGACGTTATCAATAGAGTC-CGAGGATTCGACTTCCAAGGTGATGGTCTTGCCAGT 432631 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| Sbjct 432630 AAGAGTCTTGACGAAAATTTGCAT 432607 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || || || || |||||||| ||||| | || ||||| ||||| Sbjct 433493 TGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGC 433434 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || || | ||||| ||||| || || ||||| || || || |||||| Sbjct 433433 TTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTT 433374 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || | | || | ||| ||| || || || ||||||||||| ||||| Sbjct 433373 TGCTTGACGTTGTCAATAGAGTC-CGAGGATTCGACTTCGAGAGTAATAGTCTTGCCAGT 433315 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || || ||||| || ||||| Sbjct 433314 CAAGGTCTTGACAAAGATTTGCAT 433291 >seq34 Length=381833 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 ||| | || || || ||||| ||||| |||||||| ||||| ||||| | |||||| | Sbjct 50089 GAACGCTTGGTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTTGCCTCC 50030 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 ||||| ||||||||||| | ||| | ||||| || || || ||||| |||||| |||| Sbjct 50029 ATCTTCTGGTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATT 49970 Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || | |||||||| | ||| |||||| || ||| Sbjct 49969 TGCCGCGACGAAGGCCTCCACACCGACTTTGCCTGT 49934 >seq77 Length=46662 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || || || || || || || ||||| | ||| ||||| | ||| Sbjct 33832 TGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCTTCCAATTGC 33773 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | || || |||||||| || |||||||| || ||||||||| Sbjct 33772 TTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTT 33713 Query 104477 GCTTTTACATTTTC 104490 || ||||| || Sbjct 33712 TGCTTGACATTGTC 33699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396718238712