Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq71 116 3e-21 seq27 98.7 9e-16 seq77 96.9 3e-15 seq21 89.7 5e-13 >seq71 Length=978913 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || ||||||||||| | ||| || || | ||| | | Sbjct 432821 CGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCA 432762 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || || ||| ||||||| | | ||| || || ||||| ||||||||||| Sbjct 432761 TCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTA 432702 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||| ||||||| | | || ||| | | ||||| || | |||||| Sbjct 432701 TCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATG 432642 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || ||||||||||| || || || || |||||| || Sbjct 432641 GTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGATT 432603 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || ||||||||||| | ||| || || | |||| | | Sbjct 433049 CGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCA 432990 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || ||||||| | | ||| || || || || |||||||| ||| Sbjct 432989 TCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTG 432930 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | | | || ||| | | || || || | || ||| Sbjct 432929 TCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATG 432870 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||| || |||||||| ||||| Sbjct 432869 GTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||||||||||||||| | ||| || || | |||| | ||| || Sbjct 433272 CACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 433213 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | | ||| || || || || |||||||| ||||| | Sbjct 433212 AAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTG 433153 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||||||| | | | || ||| | | || || || | || ||||| || Sbjct 433152 GATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTT 433093 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 433092 GCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || ||||||||||| | ||| || || | ||| | | Sbjct 433505 CGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCA 433446 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || || || ||||||| | | ||| || || || || |||||||| ||| Sbjct 433445 TCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTG 433386 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | | | || ||| | | ||||| || | || || Sbjct 433385 TCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGTAATA 433326 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | || || |||||||| ||||| Sbjct 433325 GTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 >seq27 Length=1513655 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/214 (72%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||| ||||| ||||| | ||| || || | |||| || | |||||| Sbjct 1427445 CAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTC--TGATAGGGTACGGCCATCCTC 1427502 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || ||| |||| || || | ||| ||||| |||||||| ||||| ||||| | Sbjct 1427503 CAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTG 1427562 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGC-GTGG--TCGACGTCAATCGTGATGGT 94974 ||| || |||||| || || || || | | || ||||| || | || || || Sbjct 1427563 AATCTTCTGCTTGACAT-GCT--CAATGGCATCCGAGGACTCGACTTCCAATGTAATAGT 1427619 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||||||| | |||||| |||||||| |||||| Sbjct 1427620 TTTTCCAGTCAAAGTTTTGACAAAGATTTGCATG 1427653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||||| || ||||||||||| | ||| || ||| || ||| Sbjct 550383 CGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCG 550324 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || ||||||| | | ||| || || |||||||||||||||||| Sbjct 550323 TCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACCTTCTTTG 550264 Query 94913 TCATAAATTTTTGCCTTGAC 94932 || | ||| ||| |||||| Sbjct 550263 TCTTGAATCTTTTGCTTGAC 550244 >seq77 Length=46662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||||||||| || ||||||||||| | ||| |||||| | || || || ||| | Sbjct 33838 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGG--AAAGAGTACGACCATCTT 33781 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || |||| || || | |||||| || |||||||||||||||||||| | Sbjct 33780 CCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTT 33721 Query 94917 AAATTTTTGCCTTGAC 94932 ||| ||| |||||| Sbjct 33720 GAATCTTTTGCTTGAC 33705 >seq21 Length=571097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || ||||| || || | ||| || || | |||| | ||| || Sbjct 539433 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCG 539492 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | | ||| || || ||||| || ||||||||||| | Sbjct 539493 AGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 539552 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| ||||||| | | | | ||| | | || || || | || || || || Sbjct 539553 ATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTG 539612 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || |||||||| ||||| Sbjct 539613 CCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||||||||| ||||| | ||| || || | |||| | ||| || Sbjct 539888 CACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 539947 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | | ||| || || ||||| || ||||||||||| | Sbjct 539948 GAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTG 540007 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||||||| | | | | ||| | | || || || | || || || || Sbjct 540008 AATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTT 540067 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || || || ||||| |||||| Sbjct 540068 GCCAGTCAGGGTCTTGACGAAGATTTGCATG 540098 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||||||||| ||||| | ||| || || | |||| | ||| || Sbjct 539660 CACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 539719 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | | ||| || || ||||| || ||||||||||| | Sbjct 539720 GAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTG 539779 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||||||| | | || ||| | | || || || | || || || || Sbjct 539780 GATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTT 539839 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || |||||||| ||||| Sbjct 539840 GCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290561185040