Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq38 167 3e-36 seq34 95.1 2e-14 >seq38 Length=1275103 Score = 167 bits (184), Expect = 3e-36 Identities = 741/1162 (64%), Gaps = 16/1162 (1%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 || || || || || ||||| |||||||| || || | |||||||| || || | Sbjct 988738 ATTTCGGTACACAGGTTACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGG 988797 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 || || ||||| ||||| || || || || | || ||||| | || | ||| || || Sbjct 988798 TTGCAGGCATCTTTATACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATG 988857 Query 63066 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTC--CTTTCTCTTTCGTAT 63122 || | ||| | | | ||||| || | || | | | | | |||| |||||| Sbjct 988858 GCGTACCACAGCTTTTGGGCCTTGATCGT---TTGGCGAGCACGGCCTTCTTGTTCGTAG 988914 Query 63123 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 63182 | | ||||| |||||| || || ||||| || | || || ||||| ||| | Sbjct 988915 CGGGCATACAGCTCTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTG 988974 Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 ||||| | || ||||||||| |||| | | ||| || ||||| ||||||||||| | | Sbjct 988975 GGACAGAACAGCGACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACC 989034 Query 63243 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 || || || ||| || ||||| | || | ||| || || || ||||| ||| Sbjct 989035 CACAGCGC-ATAGAACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAG 989093 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 || | || | | | ||| | ||||| ||||||| ||| ||||| | | | || || Sbjct 989094 GTCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGG 989153 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || ||||| || || ||||| | ||| | || ||||| || | |||| | ||| || Sbjct 989154 ACGCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGG 989213 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 | | |||||| || || ||||| || | || || ||| ||||||| || || Sbjct 989214 CAGGAGACCGTTGGAGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTT 989273 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || ||||| || || || || | || |||||| || || || | || Sbjct 989274 GTGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGT 989333 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 || ||||| || || || || || ||||| | | || || || |||||||| Sbjct 989334 TTCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTG 989393 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 ||||| || || || || || | ||||| || || || || | || || Sbjct 989394 AGGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGA 989453 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63721 | | | ||| || || | ||| | || || || ||||| || || || || Sbjct 989454 CATCAATTGGTAGGTTTCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCAC 989513 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63781 |||||| | || ||| ||||| | ||| | | || || || || | ||| || || Sbjct 989514 ACGCATGATCAAGTGTTGAGGACGCTCAGCCACTTTCCCATTGATCTTGAGCAAATAAGA 989573 Query 63782 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63841 ||||| |||||| || ||||| |||||||| ||| || || || || || || | Sbjct 989574 CCGTTCCAGAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCATAGATGATGGC 989633 Query 63842 CGAGTTGAGTTTAT---CCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAAT 63898 || ||||| || | || | || |||| | ||||| | | || || || Sbjct 989634 TGAATTGAGACGATCGGCGTTCTTGATGACAACTTGGTAAGTGGTG-TCC--GAGATCAT 989690 Query 63899 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 63958 || || ||||| || | || || || | |||| | | || || || | |||| Sbjct 989691 GGGCGAGTGTTTGCCCGTCTTGGGGTTGATATAGGTATACAAGTCTTCGACGACTTGCGA 989750 Query 63959 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 64018 || | ||||| ||||| ||||| || || || | || || | ||| || | || || Sbjct 989751 GAACACCTTTTTGGTTTCTTTGTGCAGGTTGGAGATAGCAATACGGGCAGCCAAGATAGC 989810 Query 64019 ATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||| || ||||| ||| | || || || || |||| || || ||| ||||||||| Sbjct 989811 ATAGTCAGGATG-GGTGGTGGTCATGTAAGCAGCCGTTTCAGCAGCAAGATTGTCCAATT 989869 Query 64078 CTACCGTTGTTACTCCATTATA 64099 | || || || || || | ||| Sbjct 989870 CCACAGTGGTCACACCTTGATA 989891 >seq34 Length=381833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| || || ||| ||| || || ||||| | | ||| ||||||||||| Sbjct 49926 AACAGCAGACAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAG 49985 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | || ||||| | ||| ||||| || | ||| || ||||| || || | || Sbjct 49986 AAGGTCAAACCAGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCC 50045 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 || ||||| || ||||| || ||||||||||| Sbjct 50046 GAGAAGAAAATACCTTCGACAGCAGCAAAGGC 50077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946312300240