Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq38 385 1e-101 seq25 113 1e-19 >seq38 Length=1275103 Score = 385 bits (426), Expect = 1e-101 Identities = 1068/1624 (66%), Gaps = 23/1624 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || |||| || || | | ||| || || || | | ||| || ||||| || Sbjct 989441 TTCACCCATGCCAGCCCTACGCTCTTCAACGCCGGCACGCCTCGTCCTCAAATGTCCTCG 989382 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || || ||||| || |||| || || || ||| | Sbjct 989381 TGCTTCCTCTTGACCATGAAGGAAGACTCGATCGAAGGCATCTACGAAACCCTCAAGTCT 989322 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 ||||| | || ||||||| || ||||| |||||| | |||||||| | ||||| Sbjct 989321 TGTGCCCAAATCTCCAAGACCGCTGGCGGCATTGGTCTCAACATCCACAACATCCGTGCC 989262 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | ||||||| ||||| || ||||| || || || | |||||||| || Sbjct 989261 ACTGG-CTCTTACATTGCTGGCACCAACGGCTACTCCAACGGTCTCCTGCCCATGCTCCG 989203 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| ||||| | |||||||| || ||||| ||||| || || || Sbjct 989202 AGTCTTCAACAACACTGCCCGCTACGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCTTT 989143 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| ||||| || || ||| || |||||| | || ||| | || || || || || Sbjct 989142 TGCCATGTACCTGGAACCTTGGCACGCCGATGTCTTCACCTTTTTGGACCTTCGCAAGAA 989083 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 | || || || ||| | ||||| ||||||||||||||||| || ||||| |||| | Sbjct 989082 CGTCGGCAAGGACGAAATCCGTGCCCGTGATCTGTTCTATGCGCTGTGGGTGCCTGATCT 989023 Query 363966 TTTTATGAAGCGCGTGGAGGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| ||||| || || || ||||| || || || || ||||| Sbjct 989022 CTTCATGAAGCGTGTGGAAGCCAACGGCGAG---TGGTCGCTGTTCTGTCCCAACGAAGC 988966 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || ||||| ||| |||||||| || || | | | || || | || ||| Sbjct 988965 CCCTGGTCTGCACGAAGTATGGGGCGATGAATTCGAAGAGCTGTATGCCCGCTACGAACA 988906 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || || ||||| | || || || || ||||| |||| ||||||||||| | Sbjct 988905 AGAAGGCCGTGCTCGCCAAACGATCAAGGCCCAAAAGCTGTGGTACGCCATCATGGAAGC 988846 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 || | || || || | |||| |||| |||| |||||| | ||||||||||| ||||| Sbjct 988845 CCAAACCGAAACCGGCAACCCCTTTATGCTGTATAAAGATGCCTGCAACCGCAAATCCAA 988786 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 ||| || |||| || || || || || ||||| |||||||| ||| | || ||| | Sbjct 988785 CCAACAAAACCTCGGCACCATCAAGTGCAGTAACCTGTGTACCGAAATTGTCGAGTACTC 988726 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 | || || || | ||||| || ||||| || ||||| ||||| | | ||| Sbjct 988725 CAGCCCTGATGAAATCGCCGTGTGCAACCTGGCCAGTATCGCTCTTCCCTCCTATGTCGT 988666 Query 364323 AGATGGTA---CTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGC 364377 | | | |||||||| || | || ||| ||| ||| | |||| ||| || Sbjct 988665 CAACCGCACCTCTTTTGACTTTAAGAAGCTGCATGCCGTCACCAAGGTCAT--TACCCGC 988608 Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAAT 364437 || || ||||| | ||||||| || || || || | || ||||| || || || Sbjct 988607 AACCTGAACAAGATCATCGACATCAACTACTACCCTGTCATCGAGGCCGAACGCTCCAAC 988548 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT- 364496 | |||||| ||||| |||||||| ||||| || || || || || | |||||| || | Sbjct 988547 AAGCGTCACCGCCCCATTGGTCTCGGTGTCCAAGGTCTGGCCGATGCCTTTATGCTGATG 988488 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | || | ||||| || || || | | || | ||||||||||| || Sbjct 988487 CGCTAT-CCCTTTGAATCAGACGAAGCCAAGCTGTTGAACCGTCAAATCTTTGAAACTAT 988429 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 || ||||| ||| | || || |||| || ||| || Sbjct 988428 TTACCACGCCGCCATGGAAACCTCAATGGAGCTGGCCCGTGAGCTCGGTCCTTACGAAAC 988369 Query 364617 TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC 364676 || || || |||| | || | || | ||||||| || | ||| ||||||| || Sbjct 988368 CTACGAAGGAAGCCCTGTGTCCAAAGGTATCTTCCAGTACGACATGTGGGATGTCACTCC 988309 Query 364677 ATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCA 364735 | | || ||| |||||| | || | | ||| || | ||||| || |||| Sbjct 988308 TACCGACCTCTGGGACTGGGCCGCCCTCAAGGAACAA-GTCAGCAAGCACGGCGTGCGCA 988250 Query 364736 ACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACG 364795 |||| ||| | || |||||||| || || ||||| |||| || ||||| ||||| Sbjct 988249 ACTCGCTCCTGGTCGCCCCCATGCCTACCGCCTCTACCTCACAAATGCTCGGCTTCAACG 988190 Query 364796 AGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTC 364855 | |||||||| || | ||| ||||||||| | |||||||| ||| |||| ||||| | Sbjct 988189 AATGCTTCGAGCCCTACACATCCAATCTTTACACCCGCCGGGTCCTTGCCGGTGAATTCC 988130 Query 364856 CGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCA 364915 || | || | || ||||||| || || | || | ||| ||| | Sbjct 988129 AAGTCGCCAACCCCTGGCTGCTCAAGGACCTGGTGGAGCTTGGCATCTGGAATGATGAAA 988070 Query 364916 TGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAG 364975 | |||||| ||||| ||| || || ||||| ||| |||| || | || || Sbjct 988069 TCAAGAACCGCATCATGTCCGACAACGGCTCTGTCCAGCACATCCCCAACATCCCCGATA 988010 Query 364976 ATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGG 365035 | || || | || ||||| ||||| |||||||| ||| || || ||||| ||||||| Sbjct 988009 ACCTCAAAGCCATCTACAAGACCGTGTGGGAAATCTCCCAACGCACCCTCATCGATATGG 987950 Query 365036 CGGCCGATCGCGGTGCTTTTATCTGTCAGAGCC--AGTCGTTTAACGTATTCATGACTCA 365093 | ||||| || ||||| |||||| ||| || |||| | ||||| ||||| Sbjct 987949 CTGCCGACCGTGGTGCCTTTATCGATCAATCCCAAAGTC--TCAACGTGTTCATTGGCGT 987892 Query 365094 GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGAC 365153 ||| | || | |||||| || |||||||| || ||||| ||||| ||||| ||||| Sbjct 987891 GCCTAACTTTGGCAAGCTGACCTCCATGCACTTTTACGGCTGGAAGAAGGGTCTGAAGAC 987832 Query 365154 AGGT 365157 ||| Sbjct 987831 GGGT 987828 >seq25 Length=485700 Score = 113 bits (124), Expect = 1e-19 Identities = 195/281 (69%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 364877 TCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCG 364936 |||||||| | ||||| || || ||| ||| | |||||| ||||||||| Sbjct 238781 TCAAGGATTTAATTGACCGTGGCCTTTGGAATGAGCAAACCAAGAACATGATCATCGCCC 238840 Query 364937 CTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAA 364996 || || |||||| ||| | || |||| || || || ||| || ||||||| | Sbjct 238841 ACAACGGCAGTGTGCAAAACGTGCCGTCCATTCCCGACGACCTCAAGGCTCTTTACAAGA 238900 Query 364997 CCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTA 365056 |||| |||||||| || || |||| || ||||| |||||||| |||||||||| Sbjct 238901 CCGTGTGGGAAATCTCTCAACGGGTGATCATCGACATGGCTGCCGATCGTGGTGCTTTTA 238960 Query 365057 TCTGTCAGAGCCAGTCGTTTAACGTATTCA-TGACTCAGCCAACCTCCGCCAAGCTTACA 365115 || |||| ||| || | ||| | |||| || | |||| |||| | |||||| || Sbjct 238961 TCGATCAGTCCCAATCCATGAACTTGTTCACTGGC-GAGCCTACCTTTGGCAAGCTGACC 239019 Query 365116 TCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| || |||| |||||| || || ||||| || Sbjct 239020 TCCATGCACTTTTACGCCTGGAAAAAGGGCCTCAAGACCGG 239060 Score = 95.1 bits (104), Expect = 3e-14 Identities = 178/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 363759 CTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCA 363818 ||| || || | || |||||||| ||||||| || | || || | | || ||| Sbjct 237499 CTCCAACGGCATTGTGCCCATGCTGCGTGTGTACAACGACACGGCTCGCTTTGTGACCCA 237558 Query 363819 GGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATAT 363878 |||||| || || ||||| || ||||| ||||| | || || |||| ||| | Sbjct 237559 GGGTGGCGGTAAACGCAACGGCAGCTTTGCCATGTACTTGGAACCCTGGCATGTGGATGT 237618 Query 363879 TTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCT 363938 ||||| || | || || || || ||| |||| || || ||| ||||||||||||| || Sbjct 237619 GTTTGACTTCTTGGACCTGCGCAAGAACTCGGGCAAGGAAGAACTGCGTGCACGTGACCT 237678 Query 363939 GTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTG 363998 |||| | || ||| | |||||| || ||||| || || || || | | || Sbjct 237679 GTTCCTGGGGCTCTGGATCCCTGACCTGTTCATGAAACGTGTCGAAGCCAATGGCACCTG 237738 Query 363999 GTCACTCTTTTGCCCACACGAA 364020 ||| ||||| ||||| ||||| Sbjct 237739 GTCTCTCTTCTGCCCCAACGAA 237760 Score = 87.8 bits (96), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 364648 TTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGT 364707 |||||||| || | ||| | |||| ||| |||| ||| ||| ||||||| | || || Sbjct 238500 TTCCAGTTCGACATGTGGGACGTCAAGCCCTCTGACCGCTGGGACTGGGAGGCCCTCCGA 238559 Query 364708 TCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCT 364767 | ||| ||||| ||| |||||||||||| || || ||||||||||| || Sbjct 238560 GCTCGCGTCGTCAAGCACGGTGTTCGCAACTCCCTGCTTGTCGCCCCCATGCCCACCGCC 238619 Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827 || || |||||||| |||||||| || || ||||| | || ||||| | || Sbjct 238620 AGCACCAGCCAAATCCTCGGCAACAACGAATGTTTTGAACCTTACACCAGCAACATCTAC 238679 Query 364828 TCACGCCGGGTTCTTTCCGGAGAATT 364853 | ||||| || || ||| ||||| Sbjct 238680 ACCCGCCGTGTCCTGAGCGGGGAATT 238705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351696289148