Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq27 143 2e-29 seq21 107 2e-18 seq34 104 2e-17 seq71 95.1 1e-14 >seq27 Length=1513655 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||||||| | ||||| | ||||||||| || Sbjct 1427652 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCCTCG 1427593 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||| ||||| ||||| || |||||| ||||| |||||||| ||||| |||||| Sbjct 1427592 GATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAA 1427533 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | |||||||||||| || |||| | | | | | || || ||| Sbjct 1427532 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAGACTACAAC 1427473 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 1427472 ATTCAAAAAGAATCCAC 1427456 >seq21 Length=571097 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | ||||| ||||||| || || Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| |||||||| |||||||||||||| ||||| || ||| Sbjct 539809 GACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539750 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||||| |||||||||| | | | || || || ||| Sbjct 539749 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539690 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||||||||| Sbjct 539689 ATCCAAAAAGAATCTAC 539673 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | ||||| ||||||| || || Sbjct 540097 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 540038 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| ||||||||| |||||||||||||| ||||| || ||| Sbjct 540037 GACTCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAA 539978 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||||| |||||||||| | | | || || || ||| Sbjct 539977 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539918 Query 24171 ATTCAAAAAGAATCTAC 24187 || |||||||||||||| Sbjct 539917 ATCCAAAAAGAATCTAC 539901 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | ||||| ||||||| || || Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| |||||||| |||||||||||||| ||||| || ||| Sbjct 539581 GACTCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539522 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||||| |||||||||| | | | || || || ||| Sbjct 539521 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539462 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 539461 ATCCAGAAAGAATCCAC 539445 >seq34 Length=381833 Score = 104 bits (114), Expect = 2e-17 Identities = 302/456 (66%), Gaps = 23/456 (5%) Strand=Plus/Plus Query 104602 ACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAA 104661 || || |||||||| || || |||||||| | |||||||| | | |||||| || || Sbjct 49659 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGGAGAGAAATCATGTCCATAAAGTCAAAG 49718 Query 104662 GGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACA 104721 || || | | || | ||||| | ||| | ||| || ||| || || || || Sbjct 49719 GGGTTGATGGATTTGTACACCTTTTCTTGGCCCAAGGCGACCAGCAGACGGTCAGCAACG 49778 Query 104722 AATTCGATGTACTCGCACATAGAATGTG-CATTCATGCCCAGCATTGCGACGGGTAAAGC 104780 ||||| ||||| | |||||| || ||| |||||||||| | || ||||| || || || Sbjct 49779 AATTCAATGTATTGGCACATC-AACGTGGCATTCATGCCAATCAAGGCGACAGGCAAGGC 49837 Query 104781 GTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTTCAGCACCTTGCT 104840 | || || || |||| ||||| | |||||||| || || ||| | | | Sbjct 49838 ATCGGTTAAGAATTCTTGTTCGATCTTGACGGCTTCGACAATGAT-TTC--CGTGATACG 49894 Query 104841 TTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAG-AGGCAGGCAAAGTCTG 104899 ||| | |||| | ||| || || || || || || ||||||||||| | Sbjct 49895 TTCGG--AGCTGG-----GTTGCTTATGGATGTGGCTGAACAGCAGACAGGCAAAGTCGG 49947 Query 104900 TGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGCCAGG--TAGAGC 104957 |||| | ||||| || | |||| ||||||||| | | ||||| ||||| | ||| Sbjct 49948 TGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGAAGGTCAAACCAGGCATCAAGC 50007 Query 104958 CCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAGAAAAAGACACC 105017 ||| | |||| || || |||||| ||||| || ||||| || | ||| Sbjct 50008 CCC-------GCTTCTTCAA-CCAGAAGATGGAGGCAAAGGCGCCCGAGAAGAAAATACC 50059 Query 105018 TTCGACGATGGCAAACGCGACCATGCGTTCGGCGAA 105053 |||||| ||||| || |||| |||||| || || Sbjct 50060 TTCGACAGCAGCAAAGGCCACCAAGCGTTCAGCAAA 50095 >seq71 Length=978913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | || ||| | |||||||| || Sbjct 432607 ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCG 432666 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| ||||||||| || |||||||| || ||||| || ||| Sbjct 432667 GACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAA 432726 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||||||||| ||||||| | | | || || || ||| Sbjct 432727 CAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 432786 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 432787 ATCCAAAAGGAATCCAC 432803 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | ||||| |||||||||| || Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | ||||| |||||||| ||||| ||||| || || || || ||| Sbjct 433351 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433410 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | ||||||||||| ||||||| | | | || || || ||| Sbjct 433411 CAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 433470 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 433471 ATCCAAAAGGAATCCAC 433487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935402657670