Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq27 104 2e-17 seq71 95.1 1e-14 >seq27 Length=1513655 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| || ||||| ||||||||||| | | ||| | | ||| Sbjct 1427441 AGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCC 1427500 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| ||||| ||| |||| | || ||||| || ||| | ||| || ||||| Sbjct 1427501 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCT 1427560 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || || | | | || || ||| ||||| || || ||| Sbjct 1427561 TGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTT 1427620 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 ||||| |||| ||||||||||| || ||||| |||||| Sbjct 1427621 TTTCCAGTCAAAGTTTTGACAAAGATTTGCATGATGTAGC 1427660 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||||| |||||||| ||||||||||||| | Sbjct 550395 CCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 550336 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||||||| || || ||| | || || || |||||||| ||| Sbjct 550335 AAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGA 550276 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCAC 16860 | || |||||||| ||| | ||||| || Sbjct 550275 ATACCTTCTTTGTCTTGAATCTTTTGCTTGAC 550244 >seq71 Length=978913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||||| |||||||| ||||||||||| | Sbjct 432833 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 432774 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||| ||||| ||| | ||||| || |||||||| ||| Sbjct 432773 AGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGG 432714 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | ||||| || | | | || ||| || || | Sbjct 432713 ATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACT 432654 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || || || ||||| ||||| ||||| Sbjct 432653 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087437180860