Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq71 140 3e-28 seq27 131 1e-25 seq21 129 5e-25 seq77 102 7e-17 >seq71 Length=978913 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||||||||| || || |||| || ||||||| || || || Sbjct 432835 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 432894 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || | |||||||| ||| ||||| ||||| || || ||||||||| Sbjct 432895 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 432954 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 432955 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433014 Query 25179 ATTCAAAAAGAATCCAC 25195 || ||||| |||||||| Sbjct 433015 ATCCAAAAGGAATCCAC 433031 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||||||||| || || |||| || ||||||| || || || Sbjct 433063 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 433122 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || | |||||||| ||| ||||| ||||| || || ||||||||| Sbjct 433123 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433182 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 433183 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433242 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || | ||||| Sbjct 433243 ATCCAAAAGGAATCTACTCTCCACCTTGTGCT 433274 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || || ||||||| | ||||| || || || Sbjct 432607 ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCG 432666 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| || | || | |||||||| || || |||||||| || || |||||||| Sbjct 432667 GACTCTATTGA-TAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCA 432725 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||||||||| ||| | ||||||| || ||| | || ||||| Sbjct 432726 ACAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAA 432785 Query 25178 TATTCAAAAAGAATCCAC 25195 || ||||| |||||||| Sbjct 432786 CATCCAAAAGGAATCCAC 432803 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || ||||||| || || || Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || | |||||||| ||| ||||| ||||| || || ||||||||| Sbjct 433351 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433410 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| ||||| ||| | ||||||| || ||| | || ||||| Sbjct 433411 CAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 433470 Query 25179 ATTCAAAAAGAATCCAC 25195 || ||||| |||||||| Sbjct 433471 ATCCAAAAGGAATCCAC 433487 >seq27 Length=1513655 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || |||||||| || ||| | || ||| | ||||| ||||| || Sbjct 1427652 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCCTCG 1427593 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || ||| | ||||| || || ||||| ||||| ||||| ||||| ||| Sbjct 1427592 GATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAA 1427533 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||||||||| ||| | || |||| || || | || ||||| Sbjct 1427532 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAGACTACAAC 1427473 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||||| || ||| | || || Sbjct 1427472 ATTCAAAAAGAATCCACTCTCCATCTTGTCCT 1427441 Score = 107 bits (118), Expect = 2e-18 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| | ||||| || || |||||||| || ||||||||||| ||||| |||| Sbjct 550226 TCTGACTCGATCGA--CAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTG 550283 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || ||||| || || ||||| ||||| | |||||| || ||| | Sbjct 550284 ACCAACAACGTCTGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCACCTTGTCCGACT 550343 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||| |||||||| | || || ||||| Sbjct 550344 ACAACATCCAAAAGGAATCCACCTTGCACTTGGTGCT 550380 >seq21 Length=571097 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || || | || || ||||||| || || || Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| || | || | |||||||| ||| ||||||||||| || || |||||||| Sbjct 539809 GACTCTATTGA-TAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCA 539751 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 539750 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539691 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || || | ||||| Sbjct 539690 CATCCAAAAAGAATCTACTCTCCACCTTGTGCT 539658 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || || | || || ||||||| || || || Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || | |||||||| ||| ||||||||||| || || ||||||||| Sbjct 539581 GACTCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539522 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 539521 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539462 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||||||||| Sbjct 539461 ATCCAGAAAGAATCCAC 539445 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || | || || ||||||| || || || Sbjct 540097 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 540038 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || | |||||||| || ||||||||||| || || ||||||||| Sbjct 540037 GACTCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAA 539978 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 539977 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539918 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || || | ||||| Sbjct 539917 ATCCAAAAAGAATCTACTCTCCACCTTGTGCT 539886 >seq77 Length=46662 Score = 102 bits (112), Expect = 7e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||||||| || ||||||||||| ||||| |||||||| || || | |||||||| Sbjct 33708 AAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAGCAACGCTTGATTTTTGCT 33767 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 || || ||||| ||||||| ||| ||| | ||||||||| || ||||| |||||||| Sbjct 33768 GGTAAGCAATTGGAAGATGGTCGTACTCTTTCCGATTACAACATCCAAAAGGAATCCAC 33826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327397944910