Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq34 105 7e-18 >seq34 Length=381833 Score = 105 bits (116), Expect = 7e-18 Identities = 261/390 (67%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTAC 92985 ||||| || ||||| ||||| || ||||||| |||||| || | ||| || || Sbjct 49770 TCAGCAACGAATTCAATGTATTGGCACATCAACGTGGCATTCATGCCAATCAAGGCG-AC 49828 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||| | || ||||| ||||| |||| ||||| |||||||| | |||||| | Sbjct 49829 AGGCAAGGCATCGGTTAAGAATTCTTGTTCGATCTTGACGGCTTCGACAATGATTTCCGT 49888 Query 93046 --TACTCTACTATTTGG-TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 ||| | | ||| | | || || | | | || ||| | || |||||||| Sbjct 49889 GATACGTTCGGAGCTGGGTTGCTTATGGATG---TGGCTGAACAGCAGACAGGCAAAGTC 49945 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||| || | |||||||| || | |||| || ||| ||| || ||||| || | || Sbjct 49946 GGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGAAGGTCAAACCAGGCATCAA 50005 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || ||||| | ||| || || || ||||| || || || || |||||||| || Sbjct 50006 GCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCCGAGAAGAAAATACCTTCGAC 50065 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || ||||| ||||| | ||||| ||||| | || || ||| |||||| || Sbjct 50066 AGCAGCAAAGGCCACCAAGCGTTCAGCAAA---GGAGGTGTTGCTGGAGATCCAACGGAA 50122 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||||| || || ||||| |||| ||||| Sbjct 50123 GGCCCATTCAGCCTTTTTAGTAATGCAAGG 50152 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/280 (68%), Gaps = 13/280 (5%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| || | |||| || |||| | |||| ||| || || |||||| Sbjct 50253 ATATAGGTATCAATCAGCAGACTGTAAGTTTCGGCGTGGATATTTTCAATCATGATTTGG 50312 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | ||||| | |||| ||||| | ||| | | || | Sbjct 50313 AAACCATAGAAACACTTGGCTTCGGCAATCTTGACTTCGTCCATAAAGTTTTGCACCAAG 50372 Query 93482 TTTTCATTGACTATACCATCGGATGCT-GCaaaaaaaGCCAATATATGCTTTATAAAAT- 93539 ||||||||||| ||||| || || ||| ||||| || || | |||||| ||||| | Sbjct 50373 TTTTCATTGACAATACCGTCCGA-GCTGGCAAAGAAGGCAAGGATATGCGAGATAAAGTA 50431 Query 93540 --GTT--TC--TCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 ||| || | ||||||| || |||||||| ||||| || || ||||| | Sbjct 50432 CCGTTCATCCTTGGTCATCTT----GTTTTCCCAATCACCAAGATCCTTGGAGAGATCAA 50487 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 |||||| ||||||| || || || || || |||||||| Sbjct 50488 TTTCTTCAGCAGTCCAGAAGGAGGCCTCGGCCTTTTTGTA 50527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860006473360