Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq71 163 2e-35 seq27 161 8e-35 seq21 134 1e-26 seq77 104 2e-17 >seq71 Length=978913 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || | ||||| ||||| ||| || | Sbjct 432835 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 432894 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 432895 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 432954 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| ||||| ||||| ||| | || ||| |||||| |||| || |||||| Sbjct 432955 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433014 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||||||| | || || ||| |||| | ||||| ||| Sbjct 433015 ATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGT 433062 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || | ||||| ||||| ||| || | Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 433351 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433410 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| ||||| ||||| || | || ||| ||| || |||| || |||||| Sbjct 433411 CAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 433470 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||||||| | || || ||| |||| | ||||| ||| Sbjct 433471 ATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGT 433518 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || |||| | ||||| ||| || | Sbjct 432607 ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCG 432666 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| ||||| |||||||| || || ||||| || || || ||| Sbjct 432667 GACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAA 432726 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||||||||| || | || ||| ||| || |||| || |||||| Sbjct 432727 CAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 432786 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||||||| | || || ||| |||| | ||||| ||| Sbjct 432787 ATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGT 432834 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || | ||||| ||||| ||| || | Sbjct 433063 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 433122 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 433123 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433182 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| ||||| ||||| ||| | || ||| |||||| |||| || |||||| Sbjct 433183 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433242 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 433243 ATCCAAAAGGAATCTAC 433259 >seq27 Length=1513655 Score = 161 bits (178), Expect = 8e-35 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| || || ||||| | || | ||||| || || | Sbjct 1427652 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCCTCG 1427593 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || |||| || || |||||||||||||| || ||||| || |||||| Sbjct 1427592 GATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAA 1427533 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| || | |||||| ||| ||| | || || |||||| Sbjct 1427532 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAGACTACAAC 1427473 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||||||||||||||| Sbjct 1427472 ATTCAAAAAGAATCCAC 1427456 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| ||||| ||||||||||| || |||||||| || || ||||||||||| Sbjct 550238 GACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTCTG 550297 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || ||||| || || || || || || |||||| | ||||| |||||||| ||||| Sbjct 550298 ATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCACCTTGTCCGACTACAACATCCAAAAG 550357 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| | || || || |||| | || || ||| Sbjct 550358 GAATCCACCTTGCACTTGGTGCTGCGTCTCCGTGGTGGT 550396 >seq21 Length=571097 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | ||||| ||||| ||| || | Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || |||||||| || || || || || || ||| Sbjct 539581 GACTCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | || ||| |||||| |||| || |||||| Sbjct 539521 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539462 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||||||| | || || || Sbjct 539461 ATCCAGAAAGAATCCACCTTGCACTTGGT 539433 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | ||||| ||||| ||| || | Sbjct 540097 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 540038 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| ||||||||||| || || || || || || ||| Sbjct 540037 GACTCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAA 539978 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | || ||| |||||| |||| || |||||| Sbjct 539977 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539918 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 539917 ATCCAAAAAGAATCTAC 539901 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | ||||| ||||| ||| || | Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| ||||| || |||||||| || || || || || || ||| Sbjct 539809 GACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539750 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | || ||| |||||| |||| || |||||| Sbjct 539749 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539690 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 539689 ATCCAAAAAGAATCTAC 539673 >seq77 Length=46662 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| ||||| ||||||||||| || |||||||| || || || ||||| | Sbjct 33699 GACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAGCAACGCTTG 33758 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || ||||| || || || || || ||| || || | |||||||||||||| ||||| Sbjct 33759 ATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCCGATTACAACATCCAAAAG 33818 Query 22408 GAATCCACCATACATTTAGT 22427 ||||||||| | || || || Sbjct 33819 GAATCCACCTTGCACTTGGT 33838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727416840410