Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq71 132 1e-25 seq26 114 3e-20 seq34 93.3 9e-14 >seq71 Length=978913 Score = 132 bits (146), Expect = 1e-25 Identities = 264/389 (68%), Gaps = 18/389 (5%) Strand=Plus/Plus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||| ||||| |||||||||||||| | || ||||| || || ||||||| Sbjct 738310 TGTCTGGTGGATGGAAAATGAAGCTGGCCCTTGCACGAGCCATGCTGATGAATGCCGATA 738369 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 || | ||||| || || || ||||| || |||| ||| ||||||||||| | Sbjct 738370 TCTTGCTGCTCGACGAACCGACCAATCATTTGGATGTAGTCAATGTAGCCTGGCTGGAAA 738429 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 ||||| | || |||| || |||| |||| || || |||||||| || ||| Sbjct 738430 ATTACCTGCTTGGACTCAAGACGGTGACTTCTATCATCGTGTCACACGACTCAGGTTTCT 738489 Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGA--GCAA----AATCTGAAGCTCTCCA 279939 | ||| |||||||||| ||||| |||||||| |||| || || |||| || || Sbjct 738490 TGGATCATGTGTGCTCTGATATCATCCACTATGAAGGCAACTACAAGCTCAAGCGCTACA 738549 Query 279940 AGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATG 279999 || || ||| |||| | ||||| |||| || |||| ||| | |||||| Sbjct 738550 AG------GGAAACTTGTCGGAATTCGTCAAAAAGGTGCCCAAGGCTGCCTCGTACTATT 738603 Query 280000 ACCTGAAGGACGC---CACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCA 280056 ||| | | ||| | | || | | || ||||| || || ||| |||| |||| Sbjct 738604 CGCTGGAAGCCGCTCAGATCTCC---TTCAATTTTCCTGAACCCGGCTTTTTGGAAGGCA 738660 Query 280057 TCACATCAAAGGATCGCGCAATCATGAAG 280085 ||| | | ||||| ||||| ||| | ||| Sbjct 738661 TCAAAACCAAGGAACGCGCCATCCTCAAG 738689 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 280194 GGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTT 280253 || || |||||||| ||||| | ||||| ||||| | | || || | || Sbjct 738881 GGCAAATCTACCCTGATCAAGTTACTGACGGGCGAAATTGAAGCGGAAATTGGCACAGTG 738940 Query 280254 TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAG 280313 ||||| ||||||||| |||| || || ||||| ||||| ||||| ||||| ||||| || Sbjct 738941 TGGAAACATCCCAACTTGCGAATTGCCTACGTGGCTCAACACGCATTCCATCACATTGAA 739000 Query 280314 AACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGG 280366 || || ||||| ||| || ||| | ||||| || ||||||||||| | ||| Sbjct 739001 AAACATCTGGATGAGACCCCCAACGAGTACATCCAATGGCGCTATGCTACTGG 739053 >seq26 Length=465297 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280249 CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACA 280308 |||| |||||||| || ||| |||| || || || || || || |||||||||||||||| Sbjct 150142 CCGTCTGGAAGCACCCTAACTTGCGTATTGCCTATGTTGCCCAACACGCTTTCCACCACA 150083 Query 280309 TCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGC 280368 | || || ||| |||||||||| || ||| ||||||| || ||||| ||||||| ||| Sbjct 150082 TTGAAAAGCACTTGGACATGACCCCCAACGAATACATCCAATGGCGTTATGCAACTGGTG 150023 Query 280369 AGGATC 280374 | |||| Sbjct 150022 AAGATC 150017 Score = 93.3 bits (102), Expect = 9e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| |||||||||||||||||| |||| || | || ||||| | || || ||| Sbjct 150750 TGTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCCGTGCCATGTTGATGAACGCTGATA 150691 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 || | || | || || || ||||| ||| |||| |||||| |||||| | | Sbjct 150690 TCTTGTTGTTGGACGAACCTACCAATCACTTGGATGTTGTCAACGTTGCCTGGTTGGAAA 150631 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||| | |||| |||| ||| | ||| |||| || || ||||||||||| ||| Sbjct 150630 ACTACTTGTTGGGTCTCAAGACTGTCACCTCCATCATCGTTTCCCACGACTCTGGTTTCT 150571 Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 | ||| || || || | |||||||||||| || Sbjct 150570 TGGATCATGTCTGTTCCGACATCATTCACTACGA 150537 >seq34 Length=381833 Score = 93.3 bits (102), Expect = 9e-14 Identities = 307/472 (65%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||||||||| ||||| ||||| ||| ||||| || | |||||| Sbjct 49629 TTCATGACACCAGCACGTTGATAATCAGACACACGCTTTTCAAAGAAGTTGGTCTTGCCT 49688 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | ||||| || | ||||| ||||| |||||||| ||| |||||| ||| ||| Sbjct 49689 TGGAGAGAAATCATGTCCATAAAGTCAAAGGGGTTGATGGATTTGTACACCTTTTCTTGG 49748 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 || | || || | | ||||| || || || || | || || | ||||| | Sbjct 49749 CCCAAGGCGACCAGCAGACGGTCAGCAACGAATTCAATGTATTGGCACATCAACGTGGCA 49808 Query 251704 TTCATGCCAATC-ATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 |||||||||||| | |||| ||| | || || | |||||| | |||| | || Sbjct 49809 TTCATGCCAATCAAGGCGAC-AGGCAAGGCATCGGTTAAGAATTCTTGTTCGATCTTGAC 49867 Query 251763 TGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGCTTG-TTCTCCAGCTTTGAGT 251821 || || | | ||| || | | || | ||| | ||| || | | | | Sbjct 49868 GGCTTCGACAATGATTTCCGTGATACGT-TCGGAGCTGGGTTGCTTATGGATGTGGCTGA 49926 Query 251822 ACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACA 251881 |||| || | |||| | ||| || || |||||||| | || | |||||||| | Sbjct 49927 ACAGCAGACAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGA 49986 Query 251882 GACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAG 251941 || |||||||||| || || ||| | | ||||||||| | | ||||| || | Sbjct 49987 AGGTCAAACCAGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCCG 50046 Query 251942 AGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGA 251993 |||| | | ||| |||||| | | || || | ||| |||||||| || Sbjct 50047 AGAAGAAAATACCTTCGACAGCAGCAAAGGCCACCAAGCGTTCAGCAAAGGA 50098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835298715874