Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq71 147 2e-30 seq21 132 4e-26 seq27 127 2e-24 seq77 104 2e-17 >seq71 Length=978913 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || ||| || || | || ||||| ||||| |||||||| || Sbjct 432836 ATACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCA 432777 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||| || || || |||| ||||| |||||||| ||| Sbjct 432776 GAGAGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGA 432717 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || ||||||||| || | | |||| | ||| | ||||||| Sbjct 432716 GGGATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCG 432657 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| || ||||| || || ||||| |||||| Sbjct 432656 ACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 432606 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | || ||| || || | || ||||| ||||| |||||||| || Sbjct 433518 ACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGA 433459 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||||||||| || ||||| |||| || || |||||||| || || Sbjct 433458 GAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGG 433399 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| |||||||| || | | |||| | ||| | ||||||||| Sbjct 433398 GATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGAC 433339 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| |||| || || ||||| || ||||| Sbjct 433338 TTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 >seq21 Length=571097 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | |||||||||||||| |||||||| || Sbjct 539868 ATACCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCA 539927 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || ||||| |||||||||| |||||||| ||| Sbjct 539928 GAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGA 539987 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||||||| || | | |||| | ||| | |||||| Sbjct 539988 GGGATGCCTTCTTTGTCTTGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCA 540047 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| ||||| || || || || || |||||| Sbjct 540048 ACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATG 540098 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | |||||||||||||| |||||||| || Sbjct 539640 ATACCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCA 539699 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || ||||| |||||||||| |||||||| ||| Sbjct 539700 GAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGA 539759 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| |||||||| || | | |||| | ||| | |||||| Sbjct 539760 GGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCA 539819 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| ||||| || || ||||| || ||||| Sbjct 539820 ACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || | ||| || |||||| || || || ||| Sbjct 539445 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539504 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| |||||||| ||||| |||||||||||||| |||||||| || Sbjct 539505 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539564 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| | ||| | |||||| || || | || | || ||||| ||||| || Sbjct 539565 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539624 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 539625 TTGACAAAGATTTGCAT 539641 >seq27 Length=1513655 Score = 127 bits (140), Expect = 2e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | || |||||||||||||||||||| | Sbjct 1427423 ATGCCACCACGGAGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGT-- 1427480 Query 114213 CTCATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || ||| ||||| ||| || ||||| || || || | || | ||| ||||| || | Sbjct 1427481 CTGATAGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAG 1427540 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 ||||||||||||| ||||| |||||| || || | || |||| || || | ||| | Sbjct 1427541 GAGGAATGCCTTCCTTGTCTTGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACT 1427600 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| |||| || | ||||| || |||| |||||| ||||| || |||||| Sbjct 1427601 CGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATG 1427653 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || ||||| ||||| |||||||| ||| Sbjct 550398 ATACCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCG 550339 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||| | ||| |||||||| |||| ||||| |||||||| ||| Sbjct 550338 GACAAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGA 550279 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||||| ||||||||||| ||||||||| || Sbjct 550278 GGAATACCTTCTTTGTCTTGAATCTTTTGCTT 550247 >seq77 Length=46662 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || ||||| ||||| |||||||||||| Sbjct 33859 ATACCACCACGGAGACGAAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCG 33800 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | ||| |||||||| | || | || || ||||| ||| Sbjct 33799 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGA 33740 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 ||||| ||||||||||| ||||||||| || | | |||| || ||| Sbjct 33739 GGAATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGAGTC 33690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133816275768