Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq38 390 2e-103 seq34 149 1e-30 seq25 116 7e-21 >seq38 Length=1275103 Score = 390 bits (432), Expect = 2e-103 Identities = 1263/1931 (65%), Gaps = 66/1931 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || ||||||| | ||| | ||| |||||||| || ||||| Sbjct 987778 ACGGTGAACTTGATGGCATCGACGGCAGGACGGGTACGCAGATAGTACATACCCGTCTTC 987837 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | |||| ||| | |||||||| |||||||| | || || || Sbjct 987838 AGACCCTTCTTCCAGCCGTAAAAGTGCATGGAGGTCAGCTTGCCAA-----AG--TTAGG 987890 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 | ||| | || | |||||| ||| || |||| |||| | || || Sbjct 987891 -----CACGCCAATGAACACGTTGAGACTTTGGGATTGATCGATAAAGGCACCACGGTCG 987945 Query 243917 GCGGCCATGGTGATGAGGT--CCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| ||||||| | || ||||| || || ||| ||||||||||||| | Sbjct 987946 GCAGCCATATCGATGAGGGTGCGTTGGGAGATTTCCCACACG--GTCTTGTAGATGGCTT 988003 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGT-GGACGATGAGCTGG 244033 |||||| ||||||| ||||| ||| || ||||| |||| |||| |||| || Sbjct 988004 TGAGGTTATCGGGGATGTTGGGGATGTGCTGGACAGAGCCGTTGTCGGAC-ATGATGCGG 988062 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCT-CCAGCGCCTCGACCAGGTGCCTGTT 244092 | || | ||| ||||| | ||| |||| | |||| ||| || ||| ||| Sbjct 988063 TTCTTGATTTCATCATTCCAGATGCC-AAGCTCCACCAGGTCCTTGAGCAGCCAGGGGTT 988121 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 | || || || || || | || || ||||| ||| || ||| || ||||| Sbjct 988122 GGCGACTTGGAATTCACCGGCAAGGACCCGGCGGGTGTAAAGATTGGATGTGTAGGGCTC 988181 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || || || ||| || || || | || || || |||||||| | ||||| Sbjct 988182 GAAGCATTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAGGCATGGGGGCGACCAG 988241 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACAT 244272 || ||| | |||||||||| | || | |||| || ||||||||| Sbjct 988242 GAGCGAGTTGCGCACGCCGTGCTTGCTGACTTGTTCCTTGAGGGCGGCCCAGTCCCA--- 988298 Query 244273 GCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGAC 244332 |||||| | ||| |||||||||| |||| | | || ||| || Sbjct 988299 ------GAGGTCGGTAGGAGTGACATCCCACATGTCGTACTGGAAGATACCTTTGGACAC 988352 Query 244333 GGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT-GGGCCAGCT---TACAGCTCT 244388 ||||| || |||||||| ||| |||||| || | ||||||||| | || | | Sbjct 988353 AGGGCTTCCTTCGTAGGTTTCGTAAGGACCGA-GCTCACGGGCCAGCTCCATTGAGGTTT 988411 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 | | |||||||| ||| || || || ||||| ||||| ||| | | Sbjct 988412 CC---ATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCTTCGT 988468 Query 244449 CGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | | | || ||||| || ||||| ||| ||| | |||||||| || || || |||| Sbjct 988469 CTGAT-TCAAAGGGATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGAGA 988527 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || ||||| | ||| |||||||||||||| ||| ||| || ||||| ||||| | Sbjct 988528 CCAATGGGGCGGTGACGCTTGTTGGAGCGTTCGGCCTCGATGACAGGGTAGTAGTTGATG 988587 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 ||||| | |||||| ||||||||||| || | | |||| | |||| || |||| Sbjct 988588 TCGATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTTCTTAAAG 988647 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || | || | | ||| | ||| ||| | | || |||| ||| Sbjct 988648 TCAAA-----AGAGGT-----GCGGT--TGACG---ACATAGGAGGGAAGAGCGATACTG 988692 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||||||||| ||||| | || || | | ||| ||||| |||||| ||||| || ||| Sbjct 988693 GCCAGGTTGCACACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGG 988752 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 |||||||||||||||||||| |||| || || ||||| ||| ||||||||| || || Sbjct 988753 TTACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTA 988812 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||| ||||| ||||| ||| ||||| | | || | || ||| || | Sbjct 988813 TACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTT 988872 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||||| ||| |||||| ||| ||| |||||||||| ||||| | ||| Sbjct 988873 TGGGCCTTGATCGTTTGGCGAGCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCG 988932 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCA 244986 || || |||||| || |||| || || ||| | || ||| || | || ||| Sbjct 988933 AATTCATCGCCCCATACTTCGTGCAGACCAGGG-GCTTCGTTGGGACAGAACAGCGACCA 988991 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 ||||||| | | | || | || ||||||||| || || | ||| || || | ||| || Sbjct 988992 CTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAG 989051 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | || | |||||| ||| |||||| | || ||||||||| ||||| Sbjct 989052 ATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGAC 989111 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||| ||||||| || |||| ||| | || | || ||||| ||||||||||| || || Sbjct 989112 ATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACCTTG 989171 Query 245167 GTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 || || | | || | |||||||| || || | |||| | ||||| |||| Sbjct 989172 ATCGACGTAGCGGGC-AGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAGT 989230 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 |||||||||||| ||||| | ||| || | | || |||| |||| | || | Sbjct 989231 AGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAA 989290 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 ||||| ||| ||||||||| |||| || ||||| ||| || ||||| || | Sbjct 989291 TGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCGA 989350 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 | ||| ||||||| | | || ||||| ||||||| || || || ||| | Sbjct 989351 TCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCGG 989410 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTC 245464 |||||| || || |||||||| ||||| ||| ||| |||| || | || ||| || Sbjct 989411 CGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGC-GCTCGGACATCAATTGGTAGGTT 989469 Query 245465 TGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTG 245523 | | ||| ||||||| ||||||||| ||| | ||| ||| | ||||| ||| Sbjct 989470 TCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGC-CACACGCATGATCAAGTG 989528 Query 245524 CTG-GGGCG-TCTCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTC 245581 || || || || |||| | | |||||||| || || || || || || Sbjct 989529 TTGAGGACGCTCAGCCACTTTCCCATTGAT--CTTGAGCAAATAAGACCGTTCCAGAGTT 989586 Query 245582 TTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTC 245641 ||||| |||||||| ||||||||| ||| || | ||| ||||| | ||| | Sbjct 989587 TTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCATAGATGATGGCTGAATTGAGACGA 989646 Query 245642 TCGGCGTGCTT 245652 ||||||| ||| Sbjct 989647 TCGGCGTTCTT 989657 >seq34 Length=381833 Score = 149 bits (164), Expect = 1e-30 Identities = 297/434 (68%), Gaps = 17/434 (4%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || ||||| || || ||||||||||||||||| ||||||||||||| Sbjct 50082 TGGTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTTGCCTCCATCTTCT 50023 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 || | ||| || || | |||||| || | |||||||| |||||||| || || | | Sbjct 50022 GGTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATTTGCCGCG 49963 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC---AGGCA-- 42880 |||| || || || | ||||||||||| || |||||| |||||| || | ||| Sbjct 49962 ACGAAGGCCTCCACACCGACTTTGCCTGTCTGCTGTTC---AGCCACATCCATAAGCAAC 49906 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | ||| | |||| || || || ||||| || ||||| ||||||| | || Sbjct 49905 CCAGCTC-CGAA----CGTATCACGGAAATCATTGTCGAAGCCGTCAAGATCGAACAAGA 49851 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACGACCTCATGTGC 42998 ||| | || | | |||| || || || | |||||||| ||||| | |||||| Sbjct 49850 ATTCTTAACCGATGCCTTGCCTGTCGCCTTGATTGGCATGAATGCCACG--TTGATGTGC 49793 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 | ||||| | | ||| || |||| ||| ||| | |||| | | ||| Sbjct 49792 CAATACATTGAATTCGTTGCTGACCGTCTGCTGGTCGCCTTGGGCCAAGAAAAGGTGTAC 49733 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || | |||||| ||||||||||| | || || | | |||||||||||||| Sbjct 49732 AAATCCATCAACCCCTTTGACTTTATGGACATGATTTCTCTCCAAGGCAAGACCAACTTC 49673 Query 43119 TTCGAGAAGCGCGT 43132 || || ||||| || Sbjct 49672 TTTGAAAAGCGTGT 49659 >seq25 Length=485700 Score = 116 bits (128), Expect = 7e-21 Identities = 359/551 (65%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| | |||| ||||| || || |||| ||||||| |||| | | ||| || Sbjct 237918 TTGTACATCATGTAGGGCATACCCGTTTCGATCTGGGCGTCGAGAATAGCGAACCAAAGC 237859 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | ||| | ||| || | ||| || ||| || || |||||| |||||| | Sbjct 237858 TTTTGAGCTTCGACGGTTCGGCGGGCGCGGCCTTCACGTTCATAGCGGAGGTACAGCTCT 237799 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCA-CGACGCCGGGCACATGAGAC 244982 || || | ||||| || | | || | || ||||| || | ||||| | |||| Sbjct 237798 TCAAAGGCTGGGCCATAGGCTTGATCCAAACCCGGGGCTTCGTTG--GGGCAGAAGAGAG 237741 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| ||| | | | ||| | | |||||| ||||| ||||||||||| || ||| Sbjct 237740 ACCAGGTGCCATTGGCTTCGACACGTTTCATGAACAGGTCAGGGATCCAGAGCCCCAGGA 237681 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | ||||| | | | | | || ||| ||| | |||||| | ||| ||||| ||||||| Sbjct 237680 ACAGGTCACGTGCACGCAGTTCTTCCTTGCCCGAGTTCTTGCGCAGGTCCAAGAAGTCAA 237621 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 | || || || |||||||| |||| ||| | || | | |||| || || ||| | Sbjct 237620 ACACATCCACATGCCAGGGTTCCAAGTACATGGCAAAGCTGCCGTTGCGTTTACCGCCAC 237561 Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 ||||| ||| | ||||| ||||| | | ||||| | ||||| |||||| Sbjct 237560 CCTGGGTCACAA----AGCGAGCCGTGTCGTTGTACACACGCAGCATGGGCACAATGCCG 237505 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || ||| |||||||||||| ||||| | ||| ||| | || || || Sbjct 237504 TTGGAGGTGCCGTTGGTGCCAGCAATGTACGAGCCAGAGCCGCGGATCTTTTGGAAACTG 237445 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||||| |||||||| |||||||| |||| ||| || | | ||| || ||| Sbjct 237444 ACGCCTACACCGCCGGCTGATTTGGAGATCTGGGCACAGGTCATCAAGGTATCATAGATG 237385 Query 245339 CCCTCCATGCT 245349 || || || || Sbjct 237384 CCTTCGATACT 237374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337854316640