Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq56 147 5e-30 seq71 140 8e-28 seq21 138 3e-27 seq34 134 3e-26 seq24 125 2e-23 seq27 86.0 1e-11 >seq56 Length=149020 Score = 147 bits (162), Expect = 5e-30 Identities = 310/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 72346 ACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATATCGGGTGT---CA 72402 |||| ||||| |||||| |||||||| | || ||| | |||| | ||| | | Sbjct 79157 ACGTGGATGCCCTCGGTACCTTGCGTTTGTTGGATGCCATCCGTACTTGCGGTCTGGCCG 79098 Query 72403 ACTCT---CGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTC 72459 || | || | | |||||| ||| | || || ||||| || || ||| |||| || Sbjct 79097 ACCGTGTCCGTTTCTACCAAGCCTCTACCTCTGAATTGTACGGTAAGGTGGTGGAAACTC 79038 Query 72460 CTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACG 72519 |||| | ||||| ||||| || || ||||| || || ||||| || ||| |||||| Sbjct 79037 CTCAAAAGGAAACCACTCCCTTCTACCCTCGTTCTCCCTATGGTGTGGCCAAGCTGTACG 78978 Query 72520 CTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTT 72579 ||| |||||| | || |||||||| || || ||||||| || || ||| ||| Sbjct 78977 GTTACTGGATCGTTGTCAACTACCGTGAATCCTACAACATGTTTGCCTGTAACGGTATTC 78918 Query 72580 GTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGG 72639 ||||| ||||| |||| | | |||| | || || || || || ||||| | Sbjct 78917 TGTTCAACCACGAATCTCCCCGCCGTGGCCGTACCTTTGTCACCCGCAAGATCACCCGTG 78858 Query 72640 TGGTCGCGAATATTTTCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGC 72697 ||||| | || || | | | || || ||||| |||| | ||||| || ||||| Sbjct 78857 CCGTCGCTGACATC--CATTTGGGCCGTCAAGAATGCTTGTACTTGGGTAACATCGATGC 78800 Query 72698 CAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACA 72757 ||| | |||||||| |||| || || || |||| |||||||||||| ||||||| Sbjct 78799 CAAGCGTGATTGGGGTCATGCCCGTGACTATGTCGAAGGTATGTGGTTGATGTTGCAACA 78740 Query 72758 AGATACTCCGGATGACTATGTGATTGCAACAGGGAAAAC 72796 ||| | ||||||| ||| | || || || |||| Sbjct 78739 AGAAGAAGCCGATGACTTTGTCTTGGCCACCGGTGAAAC 78701 >seq71 Length=978913 Score = 140 bits (154), Expect = 8e-28 Identities = 175/236 (74%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | || | ||| ||| |||||||| || ||||| | | Sbjct 432833 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 432774 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||| || || || ||||| ||||| ||||| | ||| Sbjct 432773 AGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGG 432714 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| || || ||| |||| ||||| || ||||| || ||||| || Sbjct 432713 ATACCTTCTTTATCTTGAATCTTTTGCTTG-ACGTTATCAATAGAGTCCGAGGATTCGAC 432655 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTA-TGTTA 288480 ||| | ||||| ||||| || || |||||||||||||| || ||||| | ||||| Sbjct 432654 TTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGATTGTTA 432599 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | || | ||| ||| |||||||| || ||||| | | Sbjct 433061 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 433002 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || || ||||| | ||| Sbjct 433001 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGG 432942 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||||| ||| || || ||||| || ||||| || ||||| || Sbjct 432941 ATACCTTCCTTGTCTTGGATCTTTTGC-TTGACGTTGTCAATAGAGTCCGAGGATTCAAC 432883 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || ||||| || |||| |||||| || || || ||||| Sbjct 432882 TTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||||||||| | || || | || | ||| ||| |||||||| || ||||| Sbjct 433520 TGACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCA 433461 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || || || ||||| | ||| || || || ||||| || || ||||| | Sbjct 433460 GAGAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGG 433401 Query 288364 GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || || ||||| ||| || || ||||| || ||||| || ||||| Sbjct 433400 GGGATACCTTCCTTGTCTTGGATCTTTTGC-TTGACGTTGTCAATAGAGTCCGAGGATTC 433342 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || ||||| || |||| |||||||| || || ||||| Sbjct 433341 GACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 >seq21 Length=571097 Score = 138 bits (152), Expect = 3e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || |||||||||||| || ||||| | | Sbjct 539643 CCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 539702 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| ||||| ||||| | ||| Sbjct 539703 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGG 539762 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || ||||| ||| || || ||||| || ||||| || ||||| || Sbjct 539763 ATGCCTTCTTTGTCTTGGATCTTTTGC-TTGACGTTATCAATAGAGTCCGAGGATTCAAC 539821 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || ||||| || ||||| |||||||| || || ||||| Sbjct 539822 TTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 136 bits (150), Expect = 9e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || |||||||||||| || ||||| | | Sbjct 539871 CCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 539930 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| ||||| ||||| | ||| Sbjct 539931 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGG 539990 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || || || ||| || || ||||| || || || || ||||| || Sbjct 539991 ATGCCTTCTTTGTCTTGAATCTTTTGC-TTGACGTTGTCAATTGAGTCCGAGGATTCAAC 540049 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 |||||| || || ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 540050 TTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATGATG 540101 >seq34 Length=381833 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 |||| || ||||||||| | ||| ||||| || |||||||| ||||| ||| | Sbjct 49821 TGATTGGCATGAATGCCACGTTGATGTGCCAATACATTGAATTCGTTGCTGACCGTCTGC 49762 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | || | || | || || |||||||| || | || ||||| | ||||||||| Sbjct 49761 TGGTCGCCTTGGGCCAAGAAAAGGTGTACAAATCCATCAACCCCTTTGACTTTATGGACA 49702 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 | ||||| ||| |||| ||||| |||||||| ||||||||||| || ||||||||| Sbjct 49701 TGATTTCTCTCCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTGTCTGATTATCAACGTG 49642 Query 269330 CTGGTGTAATGAA------TCCAGAAGACAATATTTTTGCCATCGATGATGATTTTTAA 269382 ||||||| ||||| ||| ||||| || | ||| || | |||| |||||||||| Sbjct 49641 CTGGTGTCATGAACAAGGCTCCCGAAGAAAAGACCTTTACCCTTGATGCTGATTTTTAA 49583 >seq24 Length=527347 Score = 125 bits (138), Expect = 2e-23 Identities = 261/384 (68%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| || | || || |||| || || ||| |||| ||||||| ||||| || Sbjct 63087 CCAAGCTTCAACCTCGGAACTGTACGGCAAGGTGGTCGAAACGCCTCAGAAGGAAACCAC 63146 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 ||| || || ||||| || || || || || ||| |||| | | ||||||| | Sbjct 63147 TCCCTTCTACCCTCGCTCGCCCTATGGCGTGGCCAAGCTGTATGGCTTTTGGATCGTTGT 63206 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG-A 72594 || ||||| ||||| || ||||||| || ||||| ||| |||||||||||| Sbjct 63207 CAACTACCGCGAGTCATACAACATGTTTGCCTGCAATGGGATCCTGTTCAATCACGAGTC 63266 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 | | | || | || | | || || || || || ||||| | |||||| | | | Sbjct 63267 GCCTCGAC-GCGGTCGTACTTTTGTCACCCGAAAGATCACACGTGCGGTCGCCGACA--T 63323 Query 72655 TCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 72712 || | | | || || ||||| |||| || || ||||| || ||| | | |||||||| Sbjct 63324 CCACTTGGGCCGCCAAGAATGCTTGTACCTTGGCAATATCGACGCCCAGCGCGATTGGGG 63383 Query 72713 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 72772 |||| |||||||| |||| |||||||||||||| || |||||| || || || Sbjct 63384 CCATGCACGCGATTACGTCGAAGGCATGTGGTTGATGCTACAGCAAGATGAACCCGAGGA 63443 Query 72773 CTATGTGATTGCAACAGGGAAAAC 72796 | ||| | || ||||| |||| Sbjct 63444 TTTTGTCTTGGCCACAGGCGAAAC 63467 >seq27 Length=1513655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| ||| |||||||| || ||||||| Sbjct 550395 CCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 550336 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| |||||||| ||||| || || || ||||||||||| ||||| | || Sbjct 550335 AAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGA 550276 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTT 288394 || |||||||| || || || ||| |||| Sbjct 550275 ATACCTTCTTTGTCTTGAATCTTTTGCTT 550247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652676967292