Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq34 149 1e-30 seq56 147 5e-30 seq24 125 2e-23 seq26 111 3e-19 seq38 102 2e-16 seq71 96.9 8e-15 >seq34 Length=381833 Score = 149 bits (164), Expect = 1e-30 Identities = 216/303 (71%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 243500 AAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCC 243559 ||||||| ||||| || | | |||| | |||||| | ||| || | || || | Sbjct 49884 AAATCATTGTCGAAGCCGTCAAGATCGAACAAGAATTCTTAACCGATGCCTTGCC-TGTC 49826 Query 243560 GGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGC 243618 | ||| ||||||||||| | | ||| | || ||||| |||||||| || ||||| Sbjct 49825 GCCTTGATTGGCATGAATGCCACGTTGATGTGCCAATACATTGAATTCGTTGCTGACCGT 49766 Query 243619 ATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATG 243678 | | |||| | || | || || |||||||| |||| |||||||||| ||||||| Sbjct 49765 CTGCTGGTCGCCTTGGGCCAAGAAAAGGTGTACAAATCCATCAACCCCTTTGACTTTATG 49706 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || | ||||| || ||||| || || |||||||| ||||||||||| |||||||||| Sbjct 49705 GACATGATTTCTCTCCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTGTCTGATTATCAA 49646 Query 243739 CGCCCTGGTGTGATGAA------ACCAGAGGATAACatttttgcgattgatgatgatttt 243792 || ||||||| ||||| || || || || | ||| | |||||| ||||||| Sbjct 49645 CGTGCTGGTGTCATGAACAAGGCTCCCGAAGAAAAGACCTTTACCCTTGATGCTGATTTT 49586 Query 243793 taa 243795 ||| Sbjct 49585 TAA 49583 >seq56 Length=149020 Score = 147 bits (162), Expect = 5e-30 Identities = 310/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 68335 ACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATATCGGGTGT---CA 68391 |||| ||||| |||||| |||||||| | || ||| | |||| | ||| | | Sbjct 79157 ACGTGGATGCCCTCGGTACCTTGCGTTTGTTGGATGCCATCCGTACTTGCGGTCTGGCCG 79098 Query 68392 ACTCT---CGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTC 68448 || | || | | |||||| ||| | || || ||||| || || ||| |||| || Sbjct 79097 ACCGTGTCCGTTTCTACCAAGCCTCTACCTCTGAATTGTACGGTAAGGTGGTGGAAACTC 79038 Query 68449 CTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACG 68508 |||| | ||||| ||||| || || ||||| || || ||||| || ||| |||||| Sbjct 79037 CTCAAAAGGAAACCACTCCCTTCTACCCTCGTTCTCCCTATGGTGTGGCCAAGCTGTACG 78978 Query 68509 CTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTT 68568 ||| |||||| | || |||||||| || || ||||||| || || ||| ||| Sbjct 78977 GTTACTGGATCGTTGTCAACTACCGTGAATCCTACAACATGTTTGCCTGTAACGGTATTC 78918 Query 68569 GTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGG 68628 ||||| ||||| |||| | | |||| | || || || || || ||||| | Sbjct 78917 TGTTCAACCACGAATCTCCCCGCCGTGGCCGTACCTTTGTCACCCGCAAGATCACCCGTG 78858 Query 68629 TGGTCGCGAATATTTTCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGC 68686 ||||| | || || | | | || || ||||| |||| | ||||| || ||||| Sbjct 78857 CCGTCGCTGACATC--CATTTGGGCCGTCAAGAATGCTTGTACTTGGGTAACATCGATGC 78800 Query 68687 CAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACA 68746 ||| | |||||||| |||| || || || |||| |||||||||||| ||||||| Sbjct 78799 CAAGCGTGATTGGGGTCATGCCCGTGACTATGTCGAAGGTATGTGGTTGATGTTGCAACA 78740 Query 68747 AGATACTCCGGATGACTATGTGATTGCAACAGGGAAAAC 68785 ||| | ||||||| ||| | || || || |||| Sbjct 78739 AGAAGAAGCCGATGACTTTGTCTTGGCCACCGGTGAAAC 78701 >seq24 Length=527347 Score = 125 bits (138), Expect = 2e-23 Identities = 261/384 (68%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 |||||| || | || || |||| || || ||| |||| ||||||| ||||| || Sbjct 63087 CCAAGCTTCAACCTCGGAACTGTACGGCAAGGTGGTCGAAACGCCTCAGAAGGAAACCAC 63146 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 ||| || || ||||| || || || || || ||| |||| | | ||||||| | Sbjct 63147 TCCCTTCTACCCTCGCTCGCCCTATGGCGTGGCCAAGCTGTATGGCTTTTGGATCGTTGT 63206 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG-A 68583 || ||||| ||||| || ||||||| || ||||| ||| |||||||||||| Sbjct 63207 CAACTACCGCGAGTCATACAACATGTTTGCCTGCAATGGGATCCTGTTCAATCACGAGTC 63266 Query 68584 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 68643 | | | || | || | | || || || || || ||||| | |||||| | | | Sbjct 63267 GCCTCGAC-GCGGTCGTACTTTTGTCACCCGAAAGATCACACGTGCGGTCGCCGACA--T 63323 Query 68644 TCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 68701 || | | | || || ||||| |||| || || ||||| || ||| | | |||||||| Sbjct 63324 CCACTTGGGCCGCCAAGAATGCTTGTACCTTGGCAATATCGACGCCCAGCGCGATTGGGG 63383 Query 68702 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 68761 |||| |||||||| |||| |||||||||||||| || |||||| || || || Sbjct 63384 CCATGCACGCGATTACGTCGAAGGCATGTGGTTGATGCTACAGCAAGATGAACCCGAGGA 63443 Query 68762 CTATGTGATTGCAACAGGGAAAAC 68785 | ||| | || ||||| |||| Sbjct 63444 TTTTGTCTTGGCCACAGGCGAAAC 63467 >seq26 Length=465297 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 333321 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 333380 |||||||| | ||||||||||||||||| || | |||||| |||||||| | || | Sbjct 150019 TCTTCACCAGTTGCATAACGCCATTGGATGTATTCGTTGGGGGTCATGTCCAAGTGCTTT 150078 Query 333381 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 333440 || |||||||||||||| || || || || || |||| ||||| || || |||||||| Sbjct 150079 TCAATGTGGTGGAAAGCGTGTTGGGCAACATAGGCAATACGCAAGTTAGGGTGCTTCCAG 150138 Query 333441 ACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAAT 333484 || | ||| || || ||| |||| || || | || ||| || Sbjct 150139 ACGGTACCGATGTCGGATTCGATTTCACCGGTCAACAACTTGAT 150182 >seq38 Length=1275103 Score = 102 bits (112), Expect = 2e-16 Identities = 327/498 (66%), Gaps = 21/498 (4%) Strand=Plus/Minus Query 318728 AACCTCGACA-GATCCATCGACGTCATGTCATATCCGATCAAAGAAGCGGAAACATCTAA 318786 ||||| ||| |||| |||||| ||| | || || ||| || || ||| || || Sbjct 988607 AACCTGAACAAGATC-ATCGACATCAACTACTACCCTGTCATCGAGGCCGAACGCTCCAA 988549 Query 318787 TAAACTGCGACGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACT 318846 || | | |||||||| ||| | || || ||||| || |||| ||| | || Sbjct 988548 CAAGCGTCACCGCCCCATTGGTCTCGGTGTCCAAGGTCTGGCCGATGC---CTTTATGCT 988492 Query 318847 GAAGCTC---CCATTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACA 318903 || || | || || || ||| ||||||| | | ||||| ||||||| ||| Sbjct 988491 GATGCGCTATCCCTTTGAATCAGACGAAGCCAAGCTGTTGAACCGTCAAATCTTTGAAAC 988432 Query 318904 TATCTACTACGCCGCTGTAGAAGCATCGATAGAACTCGC---TGAGATCCACGGTCCTTA 318960 ||| ||| ||||||| | ||| | || || || || || |||| || |||||||| Sbjct 988431 TATTTACCACGCCGCCATGGAAACCTCAATGGAGCTGGCCCGTGAGCTC---GGTCCTTA 988375 Query 318961 TCCAACATTCGAAGGGTCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGT 319020 ||| | |||||| || | | |||||| ||| | |||||| || |||||||||| Sbjct 988374 CGAAACCTACGAAGGAAGCCCTGTGTCCAAAGGTATCTTCCAGTACGACATGTGGGATGT 988315 Query 319021 CACTCCTA-AGAGCAATCT-CGACTGGCGCGGACTCGAAGAGCGTGT---CAAAAAAGGC 319075 |||||||| || | ||| |||||| || ||| | || | || ||| | ||| Sbjct 988314 CACTCCTACCGACC--TCTGGGACTGGGCCGCCCTCAAGGAACAAGTCAGCAAGCACGGC 988257 Query 319076 GTTCGAAATTCTCTGGTGACCGCGCTCATGCCTACCGCGAGTACCGCTCAGATATGCGGG 319135 || || || || || || ||| | |||||||||||| |||| | || || ||| Sbjct 988256 GTGCGCAACTCGCTCCTGGTCGCCCCCATGCCTACCGCCTCTACCTCACAAATGCTCGGC 988197 Query 319136 AGCATAGAAGCGTTCGAACCGATCACCTCTAATCTATATTCCCGACGTACGTTGGCGGGA 319195 || ||| ||||| || ||| || ||||| || |||| || | || || Sbjct 988196 TTCAACGAATGCTTCGAGCCCTACACATCCAATCTTTACACCCGCCGGGTCCTTGCCGGT 988137 Query 319196 GAATTCCCAGTGGTCAAC 319213 ||||||| ||| | |||| Sbjct 988136 GAATTCCAAGTCGCCAAC 988119 >seq71 Length=978913 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 |||||| || | ||||| ||||||||||| |||| |||||| ||| || ||||| | Sbjct 739060 GTCTTCGCCAGTAGCATAGCGCCATTGGATGTACTCGTTGGGGGTCTCATCCAGATGTTT 739001 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 || ||||| ||||| || || || |||||||| |||| |||| || ||||| ||||| Sbjct 739000 TTCAATGTGATGGAATGCGTGTTGAGCCACGTAGGCAATTCGCAAGTTGGGATGTTTCCA 738941 Query 333440 AACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGT 333490 || | || | ||||| |||| ||||| || | ||| || || || Sbjct 738940 CACTGTGCCAATTTCCGCTTCAATTTCGCCCGTCAGTAACTTGATCAGGGT 738890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878389105900