Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq71 118 1e-21 seq21 105 7e-18 >seq71 Length=978913 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||||| ||| |||||||| || ||||| |||| ||||| || | Sbjct 433050 ACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCC 432991 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || || || ||||| | || | | ||||| Sbjct 432990 ATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTT 432931 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| ||||| |||| ||| | || | ||| ||||| || |||| || | Sbjct 432930 GTCTTGGATCTTTTGCTTGA-CGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAA 432872 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || | |||||||||||||||||||| Sbjct 432871 TGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 111 bits (122), Expect = 2e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | | ||||| ||||| ||||| ||| |||||||| || ||||| Sbjct 433524 TTATTGACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTA 433465 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 |||| ||||| || | || || || ||||| ||||| || || || || || ||||| Sbjct 433464 GTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTC 433405 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCG 42153 | || | | |||||||| ||| ||||| |||| ||| | || | ||| | Sbjct 433404 AGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTTGTCAATAGAGTCCGAGG 433346 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || |||| || || || ||||| || | ||||| |||||||||||||| Sbjct 433345 ATTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| |||| ||||| || | || || |||||||| ||||| || Sbjct 433253 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAG 433194 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || || ||||| | || | | |||||||| ||| ||||| |||| ||| Sbjct 433193 ATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTT 433135 Query 42138 GCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | ||| ||||| || |||| || ||||| ||||| || | |||||||| Sbjct 433134 GTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTAC 433075 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 433074 AAAGATTTGCAT 433063 >seq21 Length=571097 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| ||| || || || || ||||| |||| ||||| || | || || Sbjct 539433 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCG 539492 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| || ||||| || || ||||| | || | || || ||||| | Sbjct 539493 AGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 539552 Query 42120 ATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||||| |||| ||| | || | ||| ||||| || |||| || || || || Sbjct 539553 ATCTTTTGCTTGA-CGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTT 539611 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| |||||||||||||| Sbjct 539612 GCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || ||||| |||| ||||| || | || || |||||||| ||||| || Sbjct 539679 TCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAG 539738 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || || ||||| | || | || || ||||| ||| ||||| |||| | Sbjct 539739 ATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTA 539798 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | | ||| ||||| || |||| || || || ||||| || || ||||| ||| Sbjct 539799 TCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACA 539858 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 539859 AAGATTTGCAT 539869 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || ||||| |||| ||||| || | || || |||||||| ||||| || Sbjct 539907 TCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAG 539966 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || || ||||| | || | || || ||||| || ||||| |||| ||| Sbjct 539967 ATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTGA-CGTT 540025 Query 42138 GCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | ||| ||||| || |||| || || || ||||| || || ||||| || Sbjct 540026 GTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGAC 540085 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 540086 GAAGATTTGCAT 540097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212025921760