Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq21 140 3e-28 seq71 134 1e-26 seq27 132 5e-26 seq77 96.9 3e-15 >seq21 Length=571097 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||||||||| |||||||| || | || ||||| | ||| Sbjct 539886 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539945 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||| || || ||||| ||||| || |||||||| ||| Sbjct 539946 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 540005 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || |||||||| || || | || || || || ||||| | ||| | ||| Sbjct 540006 TGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 540065 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| |||||||| Sbjct 540066 TTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 540097 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||||||||| |||||||| || | || ||||| | ||| Sbjct 539658 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539717 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||| || || ||||| ||||| || |||||||| ||| Sbjct 539718 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539777 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || |||||||| || || | | || || || ||||| | ||| | ||| Sbjct 539778 TGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539837 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || |||||||| Sbjct 539838 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | || ||||| | ||||| ||||||||||| Sbjct 539445 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539504 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 539505 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539564 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || || ||||| | ||| | |||||||| |||| || Sbjct 539565 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539624 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 539625 TTGACAAAGATTTGCAT 539641 >seq71 Length=978913 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| ||||| |||||||| || | || ||||| | ||| Sbjct 433274 AGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 433215 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | || || || || ||||| || || || ||||| || ||| Sbjct 433214 TCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 433155 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || |||||||| || || | | || || || ||||| | ||| | |||| Sbjct 433154 TGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTC 433095 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| ||||| || |||||||| Sbjct 433094 TTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | || ||||| | ||||||||||||||||| Sbjct 433031 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCA 432972 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || || ||||| || || || ||||| || ||||| || |||||||| Sbjct 432971 GCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 432912 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | | || || || ||||| | ||| | ||||||||| |||||||| Sbjct 432911 ACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTC 432852 Query 64427 TTTACGAAAATTTGCAT 64443 ||||| || |||||||| Sbjct 432851 TTTACAAAGATTTGCAT 432835 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | || || || | |||||||| ||||||||| Sbjct 432803 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCG 432744 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 432743 GCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCTTGAATCTTTTGCTTG 432684 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | | || || || ||||| | || | ||||||||| || | ||| Sbjct 432683 ACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTC 432624 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 432623 TTGACGAAAATTTGCAT 432607 >seq27 Length=1513655 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||||||||||||||| |||| | ||| || | || Sbjct 1427440 AAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATC 1427499 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || |||||||||||| |||| | || || || || |||||||| ||||| || || Sbjct 1427500 CTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTC 1427559 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||||| ||| ||| | | ||| || || ||||| | || | || Sbjct 1427560 TTGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGT 1427619 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||| || || |||||||| Sbjct 1427620 TTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 >seq77 Length=46662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| ||||||||||| | | || || | ||||| | ||||| || Sbjct 33826 GTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCTTCCAATTGCTTACCA 33767 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || |||||||| |||||||| |||||||| ||||| || |||||||| Sbjct 33766 GCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTTTGCTTG 33707 Query 64367 ACA 64369 ||| Sbjct 33706 ACA 33704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644088006160