Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq38 309 3e-79 seq25 123 2e-23 >seq38 Length=1275103 Score = 309 bits (342), Expect = 3e-79 Identities = 1079/1670 (65%), Gaps = 43/1670 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| ||||||||||||||| ||| || | |||||||| |||| | Sbjct 989606 TACAACTACTTTGGCTTCAAAACTCTGGAACGGTCTTATTTGCTCAAGATCAATGGGAAA 989547 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| || || || || | ||||| || ||| |||||||||||||| ||||| Sbjct 989546 GTGGCTGAGCGTCCTCAACACTTGATCATGCGTGTGGCCGTCGGGATTCACGGCGACGAC 989487 Query 93838 ATGCCGAA--TGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCA 93895 || ||| || |||| | | | | ||| || | ||| |||| Sbjct 989486 AT--CGATGCTGCTTTGGAAACCTACCAATTGATGTCCGAGCGCTTCTTCACCCATGCCA 989429 Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 ||| || || |||||||| || || || || || ||||| ||||| ||||| ||| Sbjct 989428 GCCCTACGCTCTTCAACGCCGGCACGCCTCGTCCTCAAATGTCCTCGTGCTTCCTCTTGA 989369 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | | |||| ||||| ||| || || | ||| | ||||||| ||||| |||| Sbjct 989368 CCATGAAGGAAGACTCGATCGAAGGCATCTACGAAACCCTCAAGTCTTGTGCCCAAATCT 989309 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || ||| || || || || ||| ||||| || | ||||||| || || |||| Sbjct 989308 CCAAGACCGCTGGCGGCATTGGTCTCAACATCCACAACATCCGTGCCACTGGCTCTTACA 989249 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | || ||||| ||| ||||||||| ||| | || |||||||| |||||||||||| Sbjct 989248 TTGCTGGCACCAACGGCTACTCCAACGGTCTCCTGCCCATGCTCCGAGTCTTCAACAACA 989189 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || |||||||| || || ||||| | | | ||| |||| || | || || | Sbjct 989188 CTGCCCGCTACGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATGTACCTGG 989129 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 | || |||||||| || || | || | ||||| || |||||| |||||| || Sbjct 989128 AACCTTGGCACGCCGATGTCTTCACCTTTTTGGACCTTCGCAAGAACGTCGGCAAGGA-- 989071 Query 94256 TGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 || | | ||| | || || ||||| || || |||||||| || || || ||||| | Sbjct 989070 -CGAAATCCGTGCCCGTGATCTGTTCTATGCGCTGTGGGTGCCTGATCTCTTCATGAAGC 989012 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || || ||| || ||| || || |||||||| ||| || || ||| || Sbjct 989011 GTGTGGAAGCCAACGGCGAGTGGTCGCTGTTCTGTCCCAACGAAGCCCCTGGTCTGCACG 988952 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAA-TCGCAGGGCAAG--- 94428 | || || || || ||||| ||||||| || |||||| | ||| | | Sbjct 988951 AAGTATGGGGCGATGAATTCGAAGAGCTGTATGCCCGCTACGAACAAGAAGGCCGTGCTC 988892 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 |||| || | || | || ||||||||| | ||| |||| | || || Sbjct 988891 GCCA--AACG--ATCAAGGCCCAAAAGCTGTGGTACGCCATCATGGAAGCCCAAACCGAA 988836 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| || ||| || || | |||| ||| |||||||| || || Sbjct 988835 ACCGGCAACCCCTTTATGCTGTATAAAGATGCCTGCAACCGCAAATCCAACCAACAAAAC 988776 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| |||||| || || ||||| ||||| ||||||||||| | || || Sbjct 988775 CTCGGCACCATCAAGTGCAGTAACCTGTGTACCGAAATTGTCGAGTACTCCAGCCCTGAT 988716 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 || || || ||||| ||||||| | ||| | ||| | | | ||| Sbjct 988715 GAAATCGCCGTGTGCAACCTGGCCAGTATC-------GCTCTTCCCTCC--TATG----- 988670 Query 94669 ACGTCTACTG--CTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGT 94724 |||| || | | || || || | || |||| | || | |||| || Sbjct 988669 TCGTCAACCGCACCTCTTTTGACTTTAAGAAGCTGCATGCCGTCAC--CAAGGTCATTAC 988612 Query 94725 CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | |||||||||| | | ||||||| |||| |||||| ||| ||||| || ||| Sbjct 988611 CCGCAACCTGAACAAGATCATCGACATCAACTACTACCCTGTCATCGAGGCCGAACGCTC 988552 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 ||| | || || ||||| || |||| ||||| ||| | || || || | || | Sbjct 988551 CAACAAGCGTCACCGCCCCATTGGTCTCGGTGTCCAAGGTCTGGCCGATGCCTTTATGCT 988492 Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAG 94904 |||||| |||| || || | ||| || | ||||| | || || |||| Sbjct 988491 GATGCGCTATCCCTTTGAATCAGACGAAGCCAAGCTGTTGAACCGTCAAATCTTTGAAAC 988432 Query 94905 CATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964 ||||| ||| |||||| || || | | ||||| | || ||| || | Sbjct 988431 TATTTACCACGCCGCCATGGAAACCTCAATGGAGCTGGCCCG---TGAGCTCGGTCCTTA 988375 Query 94965 CGAATCGTTCCGCGGATCGCCCT-TGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 |||| | | | ||| ||||| || | || || || |||| |||| | |||| || Sbjct 988374 CGAAACCTACGAAGGA-AGCCCTGTGTCCAAAGGTATCTTCCAGTACGACATGTGGGATG 988316 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 | | || | | || | ||||||| || || | | || | ||| ||||| | Sbjct 988315 TCACTCCTACCGACCTCTGGGACTGGGCCGCCCTCAAGGAACAAGTCAGCAAGCACGGCG 988256 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 || ||| |||| || || ||||||||||| || ||||| || | || || || ||| Sbjct 988255 TGCGCAACTCGCTCCTGGTCGCCCCCATGCCTACCGCCTCTACCTCACAAATGCTCGGCT 988196 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 |||||| | ||||| |||| ||| ||||| | |||| | | ||||| || ||||| | Sbjct 988195 TCAACGAATGCTTCGAGCCCTACACATCCAATCTTTACACCCGCCGGGTCCTTGCCGGTG 988136 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTG 95263 |||||| ||| |||| || || ||||||| | || || | ||| || Sbjct 988135 AATTCCAAGTCGCCAACCCCTGGCTGCTCAAGGACCTGGTGGAGCTTGGCATCTGGAATG 988076 Query 95264 ACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATAC 95323 | | ||||||||| | | || ||||||||| |||||| ||||||| | || | Sbjct 988075 ATGAAATCAAGAACCGCATCATGTCCGACAACGGCTCTGTCCAGCACATCCCCAACATCC 988016 Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || |||| || ||||||||||||||||||| ||| | || ||| Sbjct 988015 CCGATAACCTCAAAGCCATCTACAAGACCGTGTGGGAAATCTCCCAACGC 987966 >seq25 Length=485700 Score = 123 bits (136), Expect = 2e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 ||||| |||| || |||||| | || ||| | || ||||||||| | |||| | Sbjct 238462 ACGAAAGCTTCCCTGGCTCGCCCATCAGCCAAGGCGTCTTCCAGTTCGACATGTGGGACG 238521 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 | |||||||| | | | |||||||| || || || ||| || |||| ||||||| Sbjct 238522 TCAAGCCCTCTGACCGCTGGGACTGGGAGGCCCTCCGAGCTCGCGTCGTCAAGCACGGTG 238581 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| | |||||||| |||||||||||||| ||| ||| || ||||| |||| Sbjct 238582 TTCGCAACTCCCTGCTTGTCGCCCCCATGCCCACCGCCAGCACCAGCCAAATCCTCGGCA 238641 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 ||||||| | || ||||| | |||| |||| | |||| | | || || || ||||| Sbjct 238642 ACAACGAATGTTTTGAACCTTACACCAGCAACATCTACACCCGCCGTGTCCTGAGCGGGG 238701 Query 95204 AATTCC 95209 |||||| Sbjct 238702 AATTCC 238707 Score = 105 bits (116), Expect = 7e-18 Identities = 236/353 (67%), Gaps = 1/353 (0%) Strand=Plus/Plus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || || || | || ||||| |||| | | || | | || || Sbjct 237416 ATCTCCAAATCAGCCGGCGGTGTAGGCGTCAGTTTCCAAAAGATCCGCGGCTCTGGCTCG 237475 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || ||||| ||||||||||||||| | || || ||||| || || | |||| Sbjct 237476 TACATTGCTGGCACCAACGGCACCTCCAACGGCATTGTGCCCATGCTGCGTGTGTACAAC 237535 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| |||| ||| ||||||||| || | | || || || || | || Sbjct 237536 GACACGGCTCGCTTTGTGACCCAGGGTGGCGGTAAACGCAACGGCAGCTTTGCCATGTAC 237595 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || |||||||| | ||| ||| | ||| | |||||||| |||||| ||||| Sbjct 237596 TTGGAACCCTGGCATGTGGATGTGTTTGACTTCTTGGACCTGCGCAAGAACTCGGGCAAG 237655 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || | ||||| ||| | |||||| | || ||||| || |||||| Sbjct 237656 GAAGAACTGCGTGCACGTGACCTGTTCCTGGGGCTCTGGATCCCTGACCTGTTCATGAAA 237715 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 || ||||| || | ||||| ||| || || ||||| ||| | ||||| Sbjct 237716 CGTGTCGAAGCCAATGGCACCTGGTCTCTCTTCTGCCCCAACGAA-GCCCCGG 237767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722495019440