Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq71 109 5e-19 seq34 102 8e-17 seq27 98.7 1e-15 seq21 93.3 4e-14 >seq71 Length=978913 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| ||| || || | | | || |||||||| ||||||||||| Sbjct 432833 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 432774 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||| || |||| | |||| ||||| |||||||| ||||| Sbjct 432773 AGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGG 432714 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || || ||||| || | | || | | ||| | || || || Sbjct 432713 ATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACT 432654 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| ||||| || || ||||| |||||| Sbjct 432653 TCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 432606 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| ||| || || | | | || |||||||| ||||||||||| Sbjct 433061 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 433002 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | |||| || || |||||||| || || Sbjct 433001 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGG 432942 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||||| || | | || | | ||| | || || || Sbjct 432941 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACT 432882 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| ||| |||||||| || ||||| Sbjct 432881 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| ||| || || | | | || |||||||| ||||||||||| Sbjct 433517 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 433458 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||| || || | | |||| || || |||||||| || || Sbjct 433457 AGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGG 433398 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||||| || | | || | | ||| | || || || Sbjct 433397 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACT 433338 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| || || ||||| || ||||| Sbjct 433337 TCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | ||| || || || || || || || | | Sbjct 433256 GATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCA 433197 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || |||||||| || || |||||||| ||||| ||| ||||| || | Sbjct 433196 AAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACG 433137 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || || || |||| || | || || ||||||| ||| ||| Sbjct 433136 TTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTT 433077 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 433076 ACAAAGATTTGCAT 433063 >seq34 Length=381833 Score = 102 bits (112), Expect = 8e-17 Identities = 323/493 (66%), Gaps = 16/493 (3%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 ||||||||| | ||||| | |||||| ||| ||||| || | || || ||| Sbjct 50140 AAAAAGGCTGAATGGGCCTTCCGTTGGATCTCCAGCAACACCTCCT---TTGCTGAACGC 50084 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 |||||||||| || ||||| || | || || || ||| ||||||| ||||||| Sbjct 50083 TTGGTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTTGCCTCCATCTTC 50024 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | ||| | ||||| || |||| ||| |||||| |||| | ||| Sbjct 50023 TGGTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATTTGCCGC 49964 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579 |||||||| || ||||| |||||||| || || || | || | | | | || Sbjct 49963 GACGAAGGCCTCCACACCGACTTTGCCTGTCTGCTGTTCAGCCACATCCATAAGC---AA 49907 Query 52580 ATTGGATTCGGACACGATCCTG---AGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGA 52636 | | || || ||| | | ||| || || || || |||||| | || Sbjct 49906 CCCAGCTCCGAAC-GTATCACGGAAATCATTGTC---GAAGCCGTCAAGATCGAACAAGA 49851 Query 52637 GTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGA 52696 || || || | || |||| |||| || | |||||||| || || |||||| | Sbjct 49850 ATTCTTAACCGATGCCTTGCCTGTCGCCTTGATTGGCATGAATGCCACGTTGATGTGCCA 49791 Query 52697 GTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG-CAGCCAAAGTACTTCA 52755 ||||| || || || || || |||||| |||| | || ||| || |||| | || Sbjct 49790 ATACATTGAATTCGTTGCTGACCGTCTGCTGGT-CGCCTTGGGCCAAGAAAAGGTGTACA 49732 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 | | ||| || ||||| |||||| ||| ||||| || | |||||||||||||| | Sbjct 49731 AATCCATCAACCCCTTTGACTTTATGGACATGATTTCTCTCCAAGGCAAGACCAACTTCT 49672 Query 52816 TCGAGAAGCGAGT 52828 | || ||||| || Sbjct 49671 TTGAAAAGCGTGT 49659 >seq27 Length=1513655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATA--GTACGCGAGTCCTCGAGTTGTTTACCGG 138478 || || |||||||||||||||| || ||| ||||| ||||| ||||| || |||| Sbjct 1427459 GATTCTTTTTGAATGTTGTAGT--CTGATAGGGTACGGCCATCCTCCAGTTGCTTGCCGG 1427516 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || | ||| ||||| || ||||| || ||||| ||||| || || || || | Sbjct 1427517 CAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTCTGCTTGA 1427576 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 || || | || || | ||||| || || | || | ||||| ||||||| ||||| Sbjct 1427577 CATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTT 1427636 Query 138599 TTACAAAAATCTGCATG 138615 | ||||| || |||||| Sbjct 1427637 TGACAAAGATTTGCATG 1427653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | | || |||||||| |||||||||||| | Sbjct 550395 CCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 550336 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | ||| ||||| | | |||| ||||| |||||||| ||||| Sbjct 550335 AAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGA 550276 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 |||||||||||||| || ||||| || | ||||| Sbjct 550275 ATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGT 550239 >seq21 Length=571097 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| ||||||||||| | ||| || || ||||| || || || | | Sbjct 539676 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCA 539735 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| ||||| || ||||||||||| ||| ||||| || | Sbjct 539736 AAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACG 539795 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || || || |||| || | || || |||||||| || || Sbjct 539796 TTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTG 539855 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 539856 ACAAAGATTTGCAT 539869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| | ||| || || ||||| || || || | | Sbjct 539448 GATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCA 539507 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| ||||| || ||||||||||| ||| ||||| || | Sbjct 539508 AAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACG 539567 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || || || |||| || | || || |||||||| || || Sbjct 539568 TTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTG 539627 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 539628 ACAAAGATTTGCAT 539641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| ||||||||||| | ||| || || ||||| || || || | | Sbjct 539904 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCA 539963 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| ||||| || ||||||||||| || ||||| || | Sbjct 539964 AAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTGACG 540023 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || || || |||| || | || || |||||||| || || Sbjct 540024 TTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTG 540083 Query 138601 ACAAAAATCTGCATG 138615 || || || |||||| Sbjct 540084 ACGAAGATTTGCATG 540098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261692826080