Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq38 136 4e-27 seq27 100 3e-16 >seq38 Length=1275103 Score = 136 bits (150), Expect = 4e-27 Identities = 1192/1887 (63%), Gaps = 117/1887 (6%) Strand=Plus/Plus Query 145720 TCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGTC 145779 ||||||||||||| | || | |||| || || |||||||||||||| || ||| Sbjct 987775 TCGACGGTGAACTTGATGGCATCGACGGCAGGACGGGTACGCAGATAGTACATACCCGTC 987834 Query 145780 TTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA---TGACCGAGTACGTGGGT 145836 || || |||| ||| ||||||||| ||| | || || | ||| | || Sbjct 987835 TTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGGAGGTCAGCTTGCCAAAGT---TAGGC 987891 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCC 145896 || | | |||| || ||| |||| ||||| || || | | | |||||||| ||| Sbjct 987892 ACGCCAATGAACACGTTGAGACTTTGGGATTGATCGATAAAGGCACCACGGTCGGCAGCC 987951 Query 145897 ATGTCTATCA---TGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACG 145953 || || || | ||| | || |||||||| |||| || ||| | |||| | Sbjct 987952 ATATCGATGAGGGTGCGTTGGGAG---ATTTCCCACACGGTCTTGTAGATGGCTTTGAGG 988008 Query 145954 TGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGC 146013 | | ||| || | | |||| ||| ||||| || || |||| || || ||| Sbjct 988009 TTATCGGGGATGTTGGGGATGTGCTGGACAGAGCCGTTGTCGGACATGATGCGGTTCTTG 988068 Query 146014 AATTCTGGAGTGTAAATGTTCAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACCAC 146072 | ||| | | | ||| |||| || || ||| |||||| || | ||||| | || Sbjct 988069 ATTTCATCATTCCAGATGC-CAAGCTCCACCAGGTCCTTGAGCAGCCAGGGGTTGGCGAC 988127 Query 146073 CTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGA 146132 || || || ||||| || || || | || | ||| ||| | |||||||| | Sbjct 988128 TTGGAATTCACCGGCAAGGACCCGGCGGGTGTAAAGATTGGATGTGTAGGGCTCGAAGCA 988187 Query 146133 CTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGA 146192 |||||| ||||| || || | || | |||||||||||| || ||||| | || Sbjct 988188 TTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAGGCATGGGGGCGACCAGGAGCGA 988247 Query 146193 GTTTCTCACGCCGTGTCTT--TGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGA 146250 ||| | ||||||||| ||| ||| | | |||| || || ||| | ||| | | Sbjct 988248 GTTGCGCACGCCGTG-CTTGCTGACT-TGTTCCTTGAGGGCGGCCCAGTCCCAGA---GG 988302 Query 146251 TCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTC 146310 || || ||| || || | ||||||| || | | || | ||| ||||| Sbjct 988303 TCGGTAGGAGTGACATCCCACATGTCGTACTGGAAGATACCTTTGGACACAGGGCTTCCT 988362 Query 146311 TCGTACGATTCATAAGGACCGTCGATCTTGG-CCAGTTCGCAGCTAGCTT-CCAGAGCCG 146368 ||||| | ||| ||||||||| | || || |||| || || || || ||| || | Sbjct 988363 TCGTAGGTTTCGTAAGGACCGA-GCTCACGGGCCAGCTC-CATTGAGGTTTCCATGGCGG 988420 Query 146369 AAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGG 146428 ||| || || || ||| ||| | | |||| || || || ||| Sbjct 988421 CGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCTTCGTCTGATTCAAAGG 988480 Query 146429 GGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGG 146487 | ||| || | |||| |||||| ||||| ||||| || | |||| ||||| ||||||| Sbjct 988481 G-ATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGAGACCAATGGGGCGG 988539 Query 146488 TGTTTCTTGTT--ACTGTTCGCAGCGCCCGCAGTG-GGATAGTGGTTGCTGTCGATGATC 146544 || |||||| | ||||| || | || | || |||| |||| ||||||||||| Sbjct 988540 TGACGCTTGTTGGAGCGTTCG--GC-CTCGATGACAGGGTAGTAGTTGATGTCGATGATC 988596 Query 146545 TTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTT 146604 ||||| || || || | | || || | || |||| | ||||||| | Sbjct 988597 TTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTTCTTAAAGTCAAAAG-- 988654 Query 146605 TTAGTTTTAACGTTGACGCACTTGTTG---ACGGCGATAGAGGCCAAGTTACATACGGCA 146661 || | ||||||| | | | | |||||| ||||| ||| || ||||| Sbjct 988655 --AGGTGCG--GTTGACGACATAGGAGGGAAGAGCGATACTGGCCAGGTTGCACACGGCG 988710 Query 146662 GTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATG 146721 | || || | | | |||| ||||| |||| || ||||| |||||||||||| || Sbjct 988711 ATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGTTACTGCACTTGATGGTG 988770 Query 146722 CCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGT 146778 || | |||| |||||| | ||| ||||||| || || || ||||| | || Sbjct 988771 CCGAGGTTTTGTTGGTTGG---ATTTGCGGTTGCAGGCATCTTTATACAGCATAAAGGGG 988827 Query 146779 CCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCTCT--GGCCTTTACTT 146836 ||||||||| | || || | |||| | | || | || | |||||| | | Sbjct 988828 TTGCCGGTTTCGGTTTGGGCTTCCATGATGG--CGTACCACAGCTTTTGGGCCTTGA-TC 988884 Query 146837 GTCTTTCGTACAGTTTATTCTT-TTCGTATTTCTCGTACAATATTTCAAAACTA--GAAC 146893 || | || || ||||| |||||| | |||| ||| || | | | Sbjct 988885 GTTTGGCGAGCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCGAATTCATCGCCC 988944 Query 146894 CGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCT 146953 | |||| ||| | || || || | |||||||||||||||||||| || || Sbjct 988945 CATACT--TCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCGCCGTTGG 989002 Query 146954 CCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAG-GCCCAGCATCAAGTCGCGAGCC 147012 | | ||| || | ||| || | ||| || | ||| || || || | || || || || Sbjct 989003 CTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAA-CAGATCACGGGCA 989061 Query 147013 TTGG---CGTCCTCGGAGCCCATGTTGCGTC--TC----AAGTTGAGGACATCGTAAATT 147063 | |||||| | | | | ||||| || ||| ||| ||||||| Sbjct 989062 CGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCGG----- 989116 Query 147064 TCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTA---CCGCCCTGA 147120 || |||||||| |||| ||| ||| | || || ||||| || || ||| Sbjct 989117 --CG--TGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACCTTGA 989172 Query 147121 TCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTT 147180 ||||||| ||| | |||| ||||||||||| | ||||| || ||| ||| ||| | Sbjct 989173 TCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAGTAG 989232 Query 147181 G---TGGTGCCGT---TGTATTGAGCG-------CTGACGCTTTGCACGCTCAGCCCGAG 147227 ||||||| |||| |||| | || | | || | | | || || | Sbjct 989233 CCGTTGGTGCCAGCAATGTAA-GAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAAT 989291 Query 147228 ACCTCCGCCCAGATTCGAAATCAAAGCG---GACTCGTGCAAGGTCTTGTAGATGCCGTC 147284 || || | || || || || |||| | | ||| | ||||||||| || Sbjct 989292 GCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAG---GGTTTCGTAGATGCCTTC 989348 Query 147285 GATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCC 147344 ||| ||||||||| ||| ||||| ||||| ||||||| |||||| |||||| Sbjct 989349 GATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCC 989408 Query 147345 CGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAAC--GTGCCCAGACTCATCAATTGATAC 147402 || || ||||| |||||||| || ||||| | || | ||| |||||||| || Sbjct 989409 GGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGAC--ATCAATTGGTAG 989466 Query 147403 GTTTCAATGGCGCTCATA-ACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCAT 147461 ||||| | || ||| | ||| ||||||||||| | | ||| || ||||||| || Sbjct 989467 GTTTCCAAAGCAG-CATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCAA 989525 Query 147462 GTGCTGGGGTCGTTCCGCAATCACGT---CATTGACTTTTAATAGATAT--CCATTGGTC 147516 ||| || || || || || ||| | |||||| || | | ||| || || | Sbjct 989526 GTGTTGAGGACGCTCAGC---CACTTTCCCATTGATCTTGAGCAAATAAGACCGTTC--C 989580 Query 147517 AGAGTTTTGAAACCAAAGTACTTGTAG 147543 ||||||||||| |||||||| |||||| Sbjct 989581 AGAGTTTTGAAGCCAAAGTAGTTGTAG 989607 >seq27 Length=1513655 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||| ||||| || | || || ||| || || || || || Sbjct 1427456 GTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCCAGTTGCTTGCCG 1427515 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||| || || ||||| ||||| ||||| |||||||| || ||||||||| Sbjct 1427516 GCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTCTGCTTG 1427575 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | || || | || |||| ||||||||| | || | ||||| || |||| |||| Sbjct 1427576 ACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTT 1427635 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| || |||||| Sbjct 1427636 TTGACAAAGATTTGCATG 1427653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500122411360