Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 262 5e-65 seq34 95.1 1e-14 seq25 95.1 1e-14 >seq38 Length=1275103 Score = 262 bits (290), Expect = 5e-65 Identities = 1124/1747 (64%), Gaps = 52/1747 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| |||||||| || |||| ||||||| | || | ||||| |||| | Sbjct 987814 CGCAGATAGTACATACCCGTCTTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGGAGGTC 987873 Query 115618 AACTTGGAGAGTGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | ||| | | ||| |||| | ||| | |||||||||||||||||| || Sbjct 987874 AGCTTGCCAAA-GTTAGGCACGCCAATGAACACGTTGAGACTTTGGGATTGATCGATAAA 987932 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTTC 115735 | || || || || |||||||| || | | | | |||||||||||| || Sbjct 987933 GGCACCACGGTCGGCAGCCATATCGATGAGGGTGCGTTGGGA-GATTTCCCACACGGTCT 987991 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||||| | || | | ||| ||||| | ||| | |||| |||||| || | Sbjct 987992 TGTAGATGGCTTTGAGGTTATCGGGGATGTTGGGGATGTGCTGGACAGAGCCGT-TGTCG 988050 Query 115796 TGACC--ATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA- 115852 ||| ||| | | ||| || || | ||||| |||| || | || |||| | Sbjct 988051 -GACATGATGCGGTTCTTGATTTCATCATTCCAGATGCCAAGCTCCACCAGGTCCTTGAG 988109 Query 115853 ---CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGT 115909 | ||| | ||| | || || ||||| || ||| || | || | | Sbjct 988110 CAGCCAGGGG----TTGGCGACTTGGAATTCACCGGCAAGGACCCGGCGGGTGTAAAGAT 988165 Query 115910 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 115969 ||| ||||| ||||| ||||| || ||| || | ||||| | || ||||| || | Sbjct 988166 TGGATGTGTAGGGCTCGAAGCATTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAG 988225 Query 115970 GCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGG 116029 ||||||| || | || || |||||| | || | || | |||||||||||| Sbjct 988226 GCATGGGGGCGACCAGGAGCGAGTTGCGCACGCCGTGCTTGCTGACTTGTTCCTTGAGGG 988285 Query 116030 CGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 || ||||||| || | | | | |||||||| || |||||| |||||||| Sbjct 988286 CGGCCCAGTCCCAGAGGTCGGTAGGAGTGACATCCCACATGTCGTACTGGAAGATACCTT 988345 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCC-GC-CAATTC 116144 |||| | || ||| || | || || || || || |||| || || | ||| Sbjct 988346 TGGACACAGGGCTTCCTTCGTAGGTTTCGTAAGGACCGAGCTCACGGGCCAGCTCCATT- 988404 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 ||| | || | ||| ||||| || || || ||||| || || |||| ||| Sbjct 988405 -GAGGTTTCC---ATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTT 988460 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGA 116263 ||| ||||| || ||||| | || | ||| || ||||| |||| || |||||||||| Sbjct 988461 GGCTTCGTCTGATTCAAAGG-GATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGA 988519 Query 116264 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGAT 116320 ||||||| ||||| ||||| || | | | || || || ||| ||| | | || | Sbjct 988520 CACCGAGACCAATGGGGCGGTGACGCTTGTTGGAG---CGTTCGGCCTCGATGACAGGGT 988576 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | | || | ||||| | | | || || || ||| | ||||| |||| |||| | Sbjct 988577 AGTAGTTGATGTCGATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCA 988636 Query 116381 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 116440 |||| | | |||||| | | | | || | |||||| ||||| ||||| | Sbjct 988637 GCTTCTTAAAGTCAAAAGAG-GTG-CGGTTGAC-GACATAGGAGGGAAGAGCGATACTGG 988693 Query 116441 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 116500 |||| || ||||| | | | ||||| | |||||| | |||||| ||||||| | Sbjct 988694 CCAGGTTGCACACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGT 988753 Query 116501 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 116560 | | ||| |||||||| | ||| | ||| || || || ||| || ||||| || | Sbjct 988754 TACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTAT 988813 Query 116561 AGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCG 116619 | |||||| | || | || || || ||||||| | | || || | ||| | | | Sbjct 988814 ACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTTT 988873 Query 116620 GCGGCTGGCACAGT-GGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTC 116678 | | || | | | |||| || || || || | ||||| | || || | || Sbjct 988874 GGGCCTTGATCGTTTGGCGA--GCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTC 988931 Query 116679 AAACTCTTCACCCACAGCCTCTGAG-AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 || || || ||| || || | | || || || || | | |||||||| || |||| Sbjct 988932 GAATTCATCGCCC-CATACTTCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACC 988990 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | || | || || |||||||||||||| || || | ||| ||||| |||| | Sbjct 988991 ACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACA 989050 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 |||| || || ||| || | || || || | ||||||||| | || Sbjct 989051 GATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGA 989110 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA------CCAG 116911 ||| |||||||| ||||||||||||| || | | || | |||| ||| Sbjct 989111 CATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACC---GGGACGCTTGTTGCCAC 989167 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAG 116971 | || | || || | || || ||| || || || ||||| || | || ||| | | Sbjct 989168 CTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGG 989227 Query 116972 ATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATAC 117031 | | ||| || || || ||| ||| |||| | || | |||||||| | || Sbjct 989228 AGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGAC 989287 Query 117032 CAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCAT 117091 |||| || || || ||| |||||||| || || | |||| | ||||||| || | Sbjct 989288 CAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTT 989347 Query 117092 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 117151 |||||||||| |||| | | | ||||||||| |||||||| || | || || | Sbjct 989348 CGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGC 989407 Query 117152 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGG 117211 | ||||||||||| || || | || ||| |||| | | | ||||||| | ||||| Sbjct 989408 CGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGTAGG 989467 Query 117212 TCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 | ||||| ||| ||||| || |||||||| |||| | || ||||| | || || Sbjct 989468 TTTCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCAAGT 989527 Query 117272 ATTGGGG 117278 ||| || Sbjct 989528 GTTGAGG 989534 >seq34 Length=381833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| || ||||| ||| | || ||||| || |||||| || ||| Sbjct 49938 GCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGAAGGTCAAACCA 49997 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | |||||||||||||||||||| || | ||| | ||| |||||||| || Sbjct 49998 GGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCCGAGAAGAAAATA 50057 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 || || ||| || || || | | || || ||||||||| Sbjct 50058 CCTTCGACAGCAGCAAAGGCCACCAAGCGTTCAGCAAAGGAG 50099 >seq25 Length=485700 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 115554 TGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGA 115613 |||||| ||||||||||| || |||||||| |||| |||||||| || | ||||| || Sbjct 239079 TGATCGTAGGTAGTACATGCCGGTCTTGAGGCCCTTTTTCCAGGCGTAAAAGTGCATGGA 239020 Query 115614 GGACAACTTGGAGAGTGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGA 115672 || || |||| | || || || ||| |||| | |||||| |||||| ||||||| Sbjct 239019 GGTCAGCTTGCCAAAGGTAGG-CTCGCCAGTGAACAAGTTCATGGATTGGGACTGATCGA 238961 Query 115673 TGAAGCGTCCCCGATCCGCCGCCATATCAATCA-CATCC-TTCATCTTGATTTCCCACAC 115730 | || || ||||| || ||||| || || | || || || | |||||||||||| Sbjct 238960 TAAAAGCACCACGATCGGCAGCCATGTCGATGATCACCCGTTGA--GAGATTTCCCACAC 238903 Query 115731 AGTTCTGTAGAG 115742 || |||| || Sbjct 238902 GGTCTTGTAAAG 238891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506325752240