Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq38 172 9e-38 seq25 122 1e-22 >seq38 Length=1275103 Score = 172 bits (190), Expect = 9e-38 Identities = 455/685 (66%), Gaps = 10/685 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || ||||||| ||||| | |||||||| | | | | |||||||||||| || ||| Sbjct 987775 TCGACGGTGAACTTGATGGCATCGACGGCAGGACGGGTACGCAGATAGTACATACCCGTC 987834 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || ||||||| ||| ||||| | ||||||||| | ||| |||| | ||| || || Sbjct 987835 TTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGGAGGTCAGCTTGCCAAAGTTAGGCACG 987894 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | ||| | ||| ||| ||| ||| ||||| |||||| || || || || ||||| Sbjct 987895 CCAATGAACACGTTGAGACTTTGGGATTGATCGAT-AAAGGCACCACGGTCGGCAGCCAT 987953 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081 || ||| | ||| || || || |||||||| |||||| | | | || || || | Sbjct 987954 ATCGATGAGGGTGCGTTGGGAGATTTCCCACACGGTCTTGTAGATGGCTTTGAGGTTATC 988013 Query 204082 AGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 || | | | | || || || ||||||||||||| ||| | | || | | | Sbjct 988014 GGGGATGT-TGGGGATGTGCTGGACAGAGCCGTTGTCGGACATGATGCGGTTCTTGATTT 988072 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | || ||| ||||| | | | ||| ||| | ||| ||||||| || || | Sbjct 988073 CATCATTCCAGATGCCAAGCTCCACCAGGTCCTTGAGCAGCCAGGGGTTGGCGACTTGGA 988132 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | || |||| || |||| |||||| | || ||| ||| | || ||||| |||| Sbjct 988133 ATTCACCGGCAAGGACCCGGCGGGTGTAAAGATTGGATGTGTAGGGCTCGAAGCATTCGT 988192 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 || ||||| || || | ||| ||| || |||||||| || | || || ||||||| Sbjct 988193 TGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAGGCATGGGGGCGACCAGGAGCGAGTTGC 988252 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTT 204380 |||| |||| || ||| ||| || | || |||||| | | | || Sbjct 988253 GCACGCCGTGCTTGCTGACTTGTTCCTTGAGGGCGGCCCAGTCCCAGAGGTCGGTAGGAG 988312 Query 204381 TCACGCCCCACATGTCGAACTGAAAGATGCCTT--GACTGACTGGGCTGCCCTTGTACGT 204438 | || ||||||||||| |||| ||||| |||| ||| || ||||| || | ||| || Sbjct 988313 TGACATCCCACATGTCGTACTGGAAGATACCTTTGGAC--ACAGGGCTTCCTTCGTAGGT 988370 Query 204439 CGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 ||||| | || ||| ||||||| |||| |||||||| | ||| | Sbjct 988371 TTCGTAAGGACCGA-GCTCACGGGCCAGCTCCATTGAGGTTTCCATGGCGGCGTGGTAAA 988429 Query 204498 TGGTCTCAAAGATCTGAACGTTTAA 204522 | || |||||||| ||| ||| || Sbjct 988430 TAGTTTCAAAGATTTGACGGTTCAA 988454 Score = 147 bits (162), Expect = 3e-30 Identities = 402/604 (67%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 205124 TTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTG 205183 |||||||| | ||| |||||| | | ||| ||| | || ||| || || || Sbjct 988972 TTGGGACAGAACAGCGACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGC 989031 Query 205184 ATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTC 205243 | |||||| | || |||||||||||||| | ||| |||| | || | |||||| Sbjct 989032 ACCCACAGCGCATAGAACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGA 989091 Query 205244 AAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCC 205302 | ||||| ||| | | | ||||||||||| || || | ||| ||| | || || Sbjct 989092 AGGTCCAAA-AAGGTGAAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACC 989150 Query 205303 TGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCAT 205362 || | |||||| ||||| || || || ||| | | |||||| ||||| ||||| Sbjct 989151 GGGACGCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCAT 989210 Query 205363 CGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCAC 205422 |||| |||||||||| | ||||| |||| ||| ||||| || | | Sbjct 989211 GGGCAGGAGACCGTTGGAGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGAT 989270 Query 205423 GTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC-ACTCTTGCA 205481 |||| |||| ||||| ||||||| ||||| ||| ||||| | | |||| | Sbjct 989271 GTTGTGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTG-A 989329 Query 205482 GAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCA 205541 | || |||||||||| |||| || || ||| || |||| || ||||||| | || Sbjct 989330 GGGTTTCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACA 989389 Query 205542 GCTTGGCAAAGTTG-GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTC 205600 ||| | | | ||||| |||| ||||||||| |||||||| ||| ||||| | Sbjct 989390 -TTTGAGGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGC 989448 Query 205601 TCGCTCAAACACCTGTAGGTCTCC--AGCACGCTCTCCAGATCGAAGCCGTGAATACCTA 205658 ||| || | |||||| ||| |||| || || | ||| ||||||||| || | Sbjct 989449 TCGGACATCAATTGGTAGGTTTCCAAAGCA-GC-ATCGATGTCGTCGCCGTGAATCCCGA 989506 Query 205659 TGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGAGCA 205718 ||| | | ||||| | ||||||||| | ||| ||| || | || | |||||||| Sbjct 989507 CGGCCACACGCATGATCAAGTGTTGAGGACGCTCAGCCACTTTCCCATTGATCTTGAGCA 989566 Query 205719 GATA 205722 ||| Sbjct 989567 AATA 989570 Score = 120 bits (132), Expect = 5e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || ||||||| ||||| | |||||||| | | | ||||||||||| || || ||| Sbjct 900019 TCGACGGTGAACTTGATGGCATCGACGGCAGGACGGGTACTCAGATAGTAGATACCCGTC 899960 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || ||||||| ||| ||||| | ||||||||| | ||| |||| | ||| || || Sbjct 899959 TTCAGACCCTTCTTCCAACCGTAAAAGTGCATGGAGGTCAGCTTGCCAAAGTTAGGCACG 899900 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | ||| | ||| ||| ||| ||| ||||| |||||| || || || || ||||| Sbjct 899899 CCGATGAACACGTTGAGACTTTGGGATTGATCGAT-AAAGGCACCACGGTCGGCAGCCAT 899841 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||| ||||| || || || |||||| | |||||| Sbjct 899840 GTCGATGATGGTGCGTTGGGAGATTTCCCACGCGGTCTTG 899801 >seq25 Length=485700 Score = 122 bits (134), Expect = 1e-22 Identities = 171/233 (73%), Gaps = 9/233 (4%) Strand=Plus/Minus Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || ||| ||| || | |||||| | | |||| ||||| | ||||| || Sbjct 238708 TGGAATTCCCCGCTCAGGACACGGCGGGTGTAGATGTTGCTGGTGTAAGGTTCAAAACAT 238649 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||||| || || ||||||||| ||||||||||| || | ||||||||| Sbjct 238648 TCGTTGTTGCCGAGGATTTGGCTGGTGCTGGCGGTGGGCATGGGGGCGACAAGCAGGGAG 238589 Query 204317 TTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAG--GTCCAGTCGTGCATCG--C 204372 ||||| ||||||| || ||| | | || || ||| | |||||| || || | Sbjct 238588 TTGCGAACACCGTGCTTGACGACGC-GAGC-TCGGAGGGCCTCCCAGTC--CCAGCGGTC 238533 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 | ||| || ||| |||||||||||||||| |||| |||||| |||| ||||| Sbjct 238532 AGAGGGCTTGACGTCCCACATGTCGAACTGGAAGACGCCTTGGCTGA-TGGGC 238481 Score = 96.9 bits (106), Expect = 6e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || ||||| | ||||| | || ||||| | || || ||||||||||||||| Sbjct 239114 TCAACGGTGAATTTGATGGCATCGACAGCAGGGCGTGATCGTAGGTAGTACATGCCGGTC 239055 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || |||||||| | ||| |||| | ||||||||| | ||| |||| | | | || || Sbjct 239054 TTGAGGCCCTTTTTCCAGGCGTAAAAGTGCATGGAGGTCAGCTTGCCAAAGGTAGGCTC- 238996 Query 203963 GCCATGTGA--ATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 |||| |||| | ||||| || ||| || ||||| |||| | ||||| || |||| Sbjct 238995 GCCA-GTGAACAAGTTCATGGATTGGGACTGATCGATAAAAGCACCACGATCGGCAGCCA 238937 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | | ||| || | || || || |||||||| |||||| Sbjct 238936 TGTCGATGATCACCCGTTGAGAGATTTCCCACACGGTCTTG 238896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154066903840