Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq71 141 2e-28 seq21 138 3e-27 seq27 102 2e-16 seq77 89.7 1e-12 >seq71 Length=978913 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || || |||||||||| ||||||||||| | ||| Sbjct 432827 CGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 432768 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| ||||| ||||| ||||| || ||||| ||| || ||| Sbjct 432767 CGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCT 432708 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||||||||| ||| || | | ||| | | ||| || ||||| Sbjct 432707 TCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAG 432648 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || |||||||| Sbjct 432647 GTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTG 432610 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || |||||||||| ||||||||||| | ||| | |||||| Sbjct 433274 AGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 433215 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || || || ||||| || || ||||| || Sbjct 433214 TCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 433155 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| ||| || | | ||| | | ||| || || | || || ||| Sbjct 433154 TGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTC 433095 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| ||||| Sbjct 433094 TTGCCAGTCAAAGTCTTTACAAAGATTTG 433066 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || || |||||||||| ||||||||||| | ||| Sbjct 433055 CGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTG 432996 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||| || || || ||||| || || ||| Sbjct 432995 CGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCT 432936 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||||||||| ||| || | | ||| | | ||| || || | Sbjct 432935 TCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGA 432876 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||| || ||||| ||||| Sbjct 432875 GTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTG 432838 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || || |||||||||| ||||||||||| | ||| Sbjct 433511 CGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 433452 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || || ||||| || || || ||||| || || ||| Sbjct 433451 CGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCT 433392 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||||||||| ||| || | | ||| | | ||| || || | Sbjct 433391 TCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGA 433332 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||| ||||| Sbjct 433331 GTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTG 433294 >seq21 Length=571097 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || || ||||||| ||||||||||| | ||| | |||||| Sbjct 539658 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539717 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||||||||| || ||||| ||| || |||||| || Sbjct 539718 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539777 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| ||| || | | ||| | | ||| || || | || || ||| Sbjct 539778 TGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539837 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| Sbjct 539838 TTGCCAGTCAGGGTCTTGACAAAGATTTG 539866 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || || ||||||| ||||||||||| | ||| | |||||| Sbjct 539886 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539945 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||||||||| || ||||| ||| || |||||| || Sbjct 539946 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 540005 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||||||||| ||| || | | ||| | | ||| || || | || || ||| Sbjct 540006 TGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 540065 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 540066 TTGCCAGTCAGGGTCTTGACGAAGATTTG 540094 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || || || || |||| ||||||||||| | ||| | |||||| Sbjct 539430 AGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539489 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||||||||| || ||||| ||| || |||||| || Sbjct 539490 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539549 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| ||| || | | ||| | | ||| || || | || || ||| Sbjct 539550 TGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539609 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| Sbjct 539610 TTGCCAGTCAGGGTCTTGACAAAGATTTG 539638 >seq27 Length=1513655 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || || |||||||||| ||||||||| | ||| || Sbjct 550389 CGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTG 550330 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| ||||| || || ||||| ||||| || ||||| ||| ||| ||| Sbjct 550329 CGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACCT 550270 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 ||| || |||||||||||||| || Sbjct 550269 TCTTTGTCTTGAATCTTTTGCTTGAC 550244 >seq77 Length=46662 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || || |||||||||| |||||| || | | ||| | |||||| Sbjct 33841 AGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCT 33782 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || || || || | || |||||||| ||| ||| |||||| || Sbjct 33781 TCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCT 33722 Query 199538 TGAATCTTTTGCTTCAC 199554 |||||||||||||| || Sbjct 33721 TGAATCTTTTGCTTGAC 33705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919878037638