Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq71 114 1e-20 seq21 102 9e-17 seq27 93.3 5e-14 >seq71 Length=978913 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||||| || ||||||||||| |||||||| || |||||||| | Sbjct 433050 ACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCC 432991 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || || | ||| || ||||| | || | | ||||| Sbjct 432990 ATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTT 432931 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||| | ||||| ||| | | | | ||| ||||| || || | || | Sbjct 432930 GTCTTGGATCTTTTGCTTGA-CGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAA 432872 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| |||| || || |||||||||||||| Sbjct 432871 TGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || ||||||||||| || || Sbjct 433253 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAG 433194 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||| || ||||| | || | | |||||||| |||||| | ||||| ||| Sbjct 433193 ATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTT 433135 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | ||| ||||| || || | || ||||| ||||| |||| || || || Sbjct 433134 GTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTAC 433075 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 433074 AAAGATTTGCAT 433063 Score = 102 bits (112), Expect = 9e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||||| |||| ||||| || ||||||||||| ||||| Sbjct 433524 TTATTGACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTA 433465 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||| || | || || || |||||||| || || || | ||| || ||||| Sbjct 433464 GTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTC 433405 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||||| |||||| | ||||| ||| | | | | ||| | Sbjct 433404 AGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTTGTCAATAGAGTCCGAGG 433346 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || | || || || ||||| |||| || || |||||||||||||| Sbjct 433345 ATTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||||| || ||||||||||| |||||||| || ||||| || | Sbjct 432822 ACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCC 432763 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || ||||||||||| || || | || || ||||| | || | | || || Sbjct 432762 ATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTT 432703 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| | ||||| | | | | ||| ||||| || |||| ||||| Sbjct 432702 ATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGAT 432643 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || || || |||||||| Sbjct 432642 GGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 >seq21 Length=571097 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || || || ||||| |||||||| || |||||||| | || ||| Sbjct 539433 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCG 539492 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | || || ||||| | || | || || ||||| | Sbjct 539493 AGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 539552 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||||| ||| | | | | ||| ||||| || || | || || || || Sbjct 539553 ATCTTTTGCTTGA-CGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTT 539611 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || |||||||||||||| Sbjct 539612 GCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| || |||||||| | || |||||||||||||| || || Sbjct 539679 TCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAG 539738 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | || || ||||| |||||| | ||||| | Sbjct 539739 ATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTA 539798 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| ||||| || || | || || || ||||| ||||| || || ||| Sbjct 539799 TCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACA 539858 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 539859 AAGATTTGCAT 539869 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| || |||||||| | || |||||||||||||| || || Sbjct 539907 TCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAG 539966 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | || || ||||| ||||| | ||||| ||| Sbjct 539967 ATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTGA-CGTT 540025 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | ||| ||||| || || | || || || ||||| ||||| || || || Sbjct 540026 GTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGAC 540085 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 540086 GAAGATTTGCAT 540097 >seq27 Length=1513655 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||| || |||||||| ||||| || || | || || || ||||||||||| || Sbjct 1427462 TCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAA 1427521 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || || || || | || | || |||||||| ||||||| ||||| | Sbjct 1427522 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTCTGCTTGACATGC 1427581 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || || || || |||| || || ||||| || |||| ||||| ||| Sbjct 1427582 TCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACA 1427641 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 1427642 AAGATTTGCAT 1427652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237594535280